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SRR797530,SRR797531,SRR797532,...
| Gene read counts | Bidirectional read counts | Tfit regions | dREG regions |
| ZIP archive | ZIP archive | ZIP archive | ZIP archive |
| For TDF visualization files please see individual sample downloads or dataset pages for prebuilt archives. | |||
| Sample name | Sample ID | Paper identifier | Protocol | Library prep | Control/Experimental | QC score | Replicate | Outlier? |
| SRR797530 | 1068 | Ji2013sr | GRO-seq | circularization | control | 3 | 1 | No |
| SRR797531 | 1069 | Ji2013sr | GRO-seq | circularization | experimental | 4 | 1 | No |
| SRR797532 | 1070 | Ji2013sr | GRO-seq | circularization | control | 3 | 1 | No |
| SRR797533 | 1071 | Ji2013sr | GRO-seq | circularization | experimental | 4 | 1 | No |
| SRR797534 | 1072 | Ji2013sr | GRO-seq | circularization | control | 4 | 1 | No |
| SRR797535 | 1073 | Ji2013sr | GRO-seq | circularization | experimental | 5 | 1 | No |
| Sample name | Organism | Sample type | Cell type | Clone/Individual | Strain | Genotype | Construct |
| SRR797530 | M. musculus | primary cell | MEF | Srsf1 -/-; dox-repressible Srsf1 exogenous (stable) | |||
| SRR797531 | M. musculus | primary cell | MEF | Srsf1 -/-; dox-repressible Srsf1 exogenous (stable) | |||
| SRR797532 | M. musculus | primary cell | MEF | Srsf1 -/-; dox-repressible Srsf1 exogenous (stable) | |||
| SRR797533 | M. musculus | primary cell | MEF | Srsf1 -/-; dox-repressible Srsf1 exogenous (stable) | |||
| SRR797534 | M. musculus | primary cell | MEF | ||||
| SRR797535 | M. musculus | primary cell | MEF |
| Sample name | Condition type | Treatment | Start time | End time | Duration |
| SRR797530 | no treatment | None | None | None | |
| SRR797531 | treatment | doxycycline | -4 day | 0 day | 4 day |
| SRR797532 | no treatment | None | None | None | |
| SRR797533 | treatment | doxycycline | -2 day | 0 day | 2 day |
| SRR797534 | no treatment | None | None | None | |
| SRR797535 | treatment | DRB (100 microM) | -3 hr | 0 hr | 3 hr |
| Sample name | Raw read length | Trim read depth | Duplication proportion | Proportion reads mapped | Exon/intron ratio | Unique read proportion | Sample QC score | Sample NRO score |
| SRR797530 | 36 | 12,136,266 | 0.50087 | 0.6766 | 2.83333 | 0.49465 | 3 | 1 |
| SRR797531 | 36 | 8,449,443 | 0.58634 | 0.6647 | 2.87619 | 0.39728 | 4 | 1 |
| SRR797532 | 34 | 18,122,532 | 0.58949 | 0.4592 | 2.64589 | 0.39139 | 3 | 1 |
| SRR797533 | 34 | 20,936,132 | 0.82492 | 0.3689 | 2.28826 | 0.15752 | 4 | 1 |
| SRR797534 | 36 | 23,339,659 | 0.93607 | 0.5163 | 0.18637 | 0.06428 | 4 | 1 |
| SRR797535 | 36 | 22,612,146 | 0.96044 | 0.4862 | 0.14574 | 0.0388 | 5 | 1 |
| Sample name | Tfit total bidirs | Tfit promoter bidirs | Tfit intronic bidirs | Tfit intergenic bidirs | dREG total bidirs | dREG promoter bidirs | dREG intronic bidirs | dREG intergenic bidirs |
| SRR797530 | 11985 | 5925 | 3576 | 1307 | 9351 | 5239 | 1883 | 1206 |
| SRR797531 | 8824 | 4376 | 2766 | 853 | 7428 | 4509 | 1446 | 795 |
| SRR797532 | 14456 | 6623 | 4593 | 1911 | 10224 | 5530 | 2342 | 1299 |
| SRR797533 | 7374 | 3812 | 2014 | 728 | 6091 | 4131 | 920 | 505 |
| SRR797534 | 1146 | 670 | 321 | 105 | 455 | 249 | 89 | 100 |
| SRR797535 | 1680 | 1001 | 493 | 83 | 1227 | 868 | 197 | 92 |
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