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SRR9602768,SRR9602769,SRR9602770,...
| Gene read counts | Bidirectional read counts | Tfit regions | dREG regions |
| ZIP archive | ZIP archive | ZIP archive | ZIP archive |
| For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives. | |||
| Sample name | Sample ID | Paper identifier | Protocol | Library prep | Control/Experimental | Wildtype & Untreated | QC score | Replicate |
| SRR9602768 | 1407 | Lai2020directed | PRO-seq | ligation | experimental | False | 1 | 1 |
| SRR9602769 | 1408 | Lai2020directed | PRO-seq | ligation | experimental | False | 1 | 1 |
| SRR9602770 | 1409 | Lai2020directed | PRO-seq | ligation | control | False | 1 | 1 |
| SRR9602771 | 1410 | Lai2020directed | PRO-seq | ligation | experimental | False | 1 | 1 |
| SRR9602772 | 1411 | Lai2020directed | PRO-seq | ligation | control | False | 2 | 1 |
| SRR9602773 | 1412 | Lai2020directed | PRO-seq | ligation | experimental | False | 2 | 1 |
| SRR9602774 | 1413 | Lai2020directed | PRO-seq | ligation | experimental | False | 2 | 1 |
| SRR9602775 | 1414 | Lai2020directed | PRO-seq | ligation | experimental | False | 1 | 1 |
| SRR9602776 | 1415 | Lai2020directed | PRO-seq | ligation | control | False | 2 | 1 |
| Sample name | Organism | Sample type | Cell type | Clone/Individual | Strain | Genotype | Construct |
| SRR9602768 | M. musculus | cell line | MHT | ||||
| SRR9602769 | M. musculus | cell line | MHT | ||||
| SRR9602770 | M. musculus | cell line | MHT | ||||
| SRR9602771 | M. musculus | cell line | MHT | ||||
| SRR9602772 | M. musculus | cell line | MHT | ||||
| SRR9602773 | M. musculus | cell line | MHT | ||||
| SRR9602774 | M. musculus | cell line | MHT | ||||
| SRR9602775 | M. musculus | cell line | MHT | ||||
| SRR9602776 | M. musculus | cell line | MHT |
| Sample name | Condition type | Treatment | Start time | End time | Duration |
| SRR9602768 | treatment | Nedd4 intronic antisense oligonucleotide 2 (10 microM) | -1 day | 0 day | 1 day |
| SRR9602769 | treatment | Nedd4 exonic antisense oligonucleotide 2 (10 microM) | -1 day | 0 day | 1 day |
| SRR9602770 | treatment | control antisense oligonucleotide (10 microM) | -1 day | 0 day | 1 day |
| SRR9602771 | treatment | Atxn10 intronic antisense oligonucleotide 1 (10 microM) | -1 day | 0 day | 1 day |
| SRR9602772 | treatment | control antisense oligonucleotide (10 microM) | -1 day | 0 day | 1 day |
| SRR9602773 | treatment | Nedd4 exonic antisense oligonucleotide 3 (10 microM) | -1 day | 0 day | 1 day |
| SRR9602774 | treatment | Atxn10 intronic antisense oligonucleotide 1 (10 microM) | -1 day | 0 day | 1 day |
| SRR9602775 | treatment | Atxn10 exonic antisense oligonucleotide 1 (10 microM) | -1 day | 0 day | 1 day |
| SRR9602776 | treatment | control antisense oligonucleotide (10 microM) | -1 day | 0 day | 1 day |
| Sample name | Raw read length | Trim read depth | Duplication proportion | Proportion reads mapped | Exon/intron ratio | Unique read proportion | Sample QC score | Sample NRO score |
| SRR9602768 | 12 | 151,143,128 | 0.43256 | 0.889 | 3.43374 | 0.8345 | 1 | 2 |
| SRR9602769 | 16 | 189,374,682 | 0.47146 | 0.8941 | 3.36983 | 0.84153 | 1 | 2 |
| SRR9602770 | 27 | 162,155,131 | 0.45862 | 0.8939 | 3.79372 | 0.82017 | 1 | 2 |
| SRR9602771 | 55 | 113,637,935 | 0.48148 | 0.7574 | 4.27468 | 0.75906 | 1 | 2 |
| SRR9602772 | 56 | 80,067,052 | 0.55631 | 0.7082 | 5.33996 | 0.66268 | 2 | 3 |
| SRR9602773 | 56 | 85,987,871 | 0.63968 | 0.675 | 5.46103 | 0.59657 | 2 | 3 |
| SRR9602774 | 34 | 71,128,414 | 0.53313 | 0.6743 | 4.02656 | 0.59951 | 2 | 2 |
| SRR9602775 | 25 | 75,228,293 | 0.44881 | 0.6956 | 3.43302 | 0.6978 | 1 | 2 |
| SRR9602776 | 45 | 79,795,118 | 0.58205 | 0.6374 | 4.10843 | 0.56402 | 2 | 2 |
| Sample name | Tfit total bidirs | Tfit promoter bidirs | Tfit intronic bidirs | Tfit intergenic bidirs | dREG total bidirs | dREG promoter bidirs | dREG intronic bidirs | dREG intergenic bidirs |
| SRR9602768 | 43516 | 14009 | 11748 | 14781 | 51275 | 5787 | 21919 | 19459 |
| SRR9602769 | 48123 | 14264 | 13036 | 17789 | 62194 | 5825 | 27033 | 24810 |
| SRR9602770 | 54525 | 16048 | 15383 | 20383 | 64745 | 6098 | 28328 | 25666 |
| SRR9602771 | 50272 | 16412 | 14436 | 16208 | 45113 | 6125 | 18481 | 16380 |
| SRR9602772 | 52761 | 16453 | 16578 | 16470 | 39619 | 6345 | 15494 | 13770 |
| SRR9602773 | 46702 | 15630 | 14773 | 12981 | 34412 | 6302 | 13222 | 10962 |
| SRR9602774 | 51881 | 16830 | 16510 | 15676 | 39444 | 6779 | 16059 | 13214 |
| SRR9602775 | 48359 | 15597 | 14825 | 15233 | 38801 | 6664 | 15880 | 12900 |
| SRR9602776 | 50748 | 16591 | 16228 | 15102 | 38597 | 6535 | 15653 | 12796 |
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