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Downloads

Gene read counts	Bidirectional read counts	Tfit regions	dREG regions
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For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives.

Technical details

Sample name	Sample ID	Paper identifier	Protocol	Library prep	Control/Experimental	Wildtype & Untreated	QC score	Replicate
SRR3317155	1601	Liu2013brd4	GRO-seq	circularization	control	False	2	1
SRR3317156	1602	Liu2013brd4	GRO-seq	circularization	experimental	False	4	1
SRR3317157	1603	Liu2013brd4	GRO-seq	circularization	experimental	False	1	1
SRR3317158	1604	Liu2013brd4	GRO-seq	circularization	experimental	False	4	1
SRR3317159	1605	Liu2013brd4	GRO-seq	circularization	experimental	False	1	1
SRR3317160	1606	Liu2013brd4	GRO-seq	circularization	control	False	3	2
SRR3317161	1607	Liu2013brd4	GRO-seq	circularization	experimental	False	2	2
SRR3317162	1608	Liu2013brd4	GRO-seq	circularization	experimental	False	2	2
SRR3317163	1609	Liu2013brd4	GRO-seq	circularization	experimental	False	3	2
SRR3317164	1610	Liu2013brd4	GRO-seq	circularization	experimental	False	2	2

Cellular details

Sample name	Organism	Sample type	Cell type	Clone/Individual	Strain	Genotype	Construct
SRR3317155	H. sapiens	cell line	HEK293T				siRNA control
SRR3317156	H. sapiens	cell line	HEK293T				siRNA JMJD6
SRR3317157	H. sapiens	cell line	HEK293T				siRNA JMJD6
SRR3317158	H. sapiens	cell line	HEK293T				siRNA Brd4
SRR3317159	H. sapiens	cell line	HEK293T				siRNA Brd4
SRR3317160	H. sapiens	cell line	HEK293T				siRNA control
SRR3317161	H. sapiens	cell line	HEK293T				siRNA JMJD6
SRR3317162	H. sapiens	cell line	HEK293T				siRNA JMJD6
SRR3317163	H. sapiens	cell line	HEK293T				siRNA Brd4
SRR3317164	H. sapiens	cell line	HEK293T				siRNA Brd4

Conditions

Sample name	Condition type	Treatment	Start time	End time	Duration
SRR3317155	no treatment		None	None	None
SRR3317156	no treatment		None	None	None
SRR3317157	no treatment		None	None	None
SRR3317158	no treatment		None	None	None
SRR3317159	no treatment		None	None	None
SRR3317160	no treatment		None	None	None
SRR3317161	no treatment		None	None	None
SRR3317162	no treatment		None	None	None
SRR3317163	no treatment		None	None	None
SRR3317164	no treatment		None	None	None

Sample metrics

Sample name	Raw read length	Trim read depth	Duplication proportion	Proportion reads mapped	Exon/intron ratio	Unique read proportion	Sample QC score	Sample NRO score
SRR3317155	36	17,796,470	0.40162	0.7974	1.72867	0.64772	2	1
SRR3317156	36	10,724,371	0.18647	0.7298	1.60227	0.80105	4	1
SRR3317157	36	28,035,857	0.28864	0.8399	1.94479	0.75685	1	1
SRR3317158	36	10,331,214	0.25604	0.7381	1.59281	0.72508	4	1
SRR3317159	36	21,663,970	0.40741	0.8055	2.37874	0.63515	1	1
SRR3317160	50	38,231,899	0.79024	0.8944	3.22263	0.22401	3	2
SRR3317161	50	37,169,013	0.58231	0.8911	2.6104	0.44305	2	1
SRR3317162	50	36,967,640	0.51355	0.8968	2.66904	0.51442	2	1
SRR3317163	50	42,402,122	0.67868	0.8213	2.8691	0.39127	3	1
SRR3317164	50	44,980,866	0.63253	0.9006	2.65705	0.39478	2	1

Bidirectionals

Sample name	Tfit total bidirs	Tfit promoter bidirs	Tfit intronic bidirs	Tfit intergenic bidirs	dREG total bidirs	dREG promoter bidirs	dREG intronic bidirs	dREG intergenic bidirs
SRR3317155	18929	6015	8852	1931	9929	3882	3548	1532
SRR3317156	12172	4044	5978	1555	5226	2278	1992	964
SRR3317157	20378	8316	8789	2628	13270	5832	4928	2352
SRR3317158	14680	5085	7641	1474	5513	2507	2189	960
SRR3317159	26720	11547	11330	2995	14069	6873	4920	2262
SRR3317160	10750	5605	3920	565	6715	4237	1730	811
SRR3317161	17177	8626	6528	1680	11805	6522	3745	1717
SRR3317162	18186	9060	6894	1887	12460	6572	4064	1936
SRR3317163	18322	9469	6876	1596	12699	7170	3882	1826
SRR3317164	18417	8747	7283	1799	12419	6664	3946	1888