DBNascent | Samples

SRZ2960994,SRZ2960996,SRZ2960998,...

**Downloads**
Gene read counts	Bidirectional read counts	Tfit regions	dREG regions
ZIP archive	ZIP archive	ZIP archive	ZIP archive
For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives.

**Technical details**
Sample name	Sample ID	Paper identifier	Protocol	Library prep	Control/Experimental	Wildtype & Untreated	QC score	Replicate
SRZ2960994	1768	Magnuson2015identifying	Bru-seq	ligation	control	True	3	1
SRZ2960996	1769	Magnuson2015identifying	Bru-seq	ligation	control	True	4	1
SRZ2960998	1770	Magnuson2015identifying	Bru-seq	ligation	experimental	False	4	1
SRZ2961000	1771	Magnuson2015identifying	Bru-seq	ligation	experimental	False	4	1
SRZ2961002	1772	Magnuson2015identifying	Bru-seq	ligation	control	True	2	1
SRZ2961004	1773	Magnuson2015identifying	Bru-seq	ligation	experimental	False	4	1
SRZ2961006	1774	Magnuson2015identifying	Bru-seq	ligation	experimental	False	4	1
SRZ2961008	1775	Magnuson2015identifying	Bru-seq	ligation	experimental	False	3	2
SRZ2961012	1776	Magnuson2015identifying	Bru-seq	ligation	experimental	False	3	3

**Cellular details**
Sample name	Organism	Sample type	Cell type	Clone/Individual	Strain	Genotype	Construct
SRZ2960994	H. sapiens	cell line	K562
SRZ2960996	H. sapiens	cell line	K562
SRZ2960998	H. sapiens	cell line	K562
SRZ2961000	H. sapiens	cell line	K562
SRZ2961002	H. sapiens	cell line	HF1
SRZ2961004	H. sapiens	cell line	HF1
SRZ2961006	H. sapiens	cell line	HF1
SRZ2961008	H. sapiens	cell line	HF1
SRZ2961012	H. sapiens	cell line	HF1

**Conditions**
Sample name	Condition type	Treatment	Start time	End time	Duration
SRZ2960994	treatment	bromouridine (2 mM)	-30 min	0 min	30 min
SRZ2960996	treatment	bromouridine (2 mM)	-390 min	-360 min	30 min
SRZ2960998	treatment	bromouridine (2 mM)	-30 min	0 min	30 min
	treatment	ultraviolet C (1 J/m^2/s)	-1825 s	-1800 s	25 s
SRZ2961000	treatment	bromouridine (2 mM)	-30 min	0 min	30 min
	treatment	ultraviolet C (1 J/m^2/s)	-1900 s	-1800 s	100 s
SRZ2961002	treatment	bromouridine (2 mM)	-30 min	0 min	30 min
SRZ2961004	treatment	bromouridine (2 mM)	-30 min	0 min	30 min
	treatment	ultraviolet C (1 J/m^2/s)	-1820 s	-1800 s	20 s
SRZ2961006	treatment	bromouridine (2 mM)	-30 min	0 min	30 min
	treatment	ultraviolet C (1 J/m^2/s)	-1820 s	-1800 s	20 s
	treatment	TNF-alpha (10 ng/mL)	-90 min	-30 min	1 hr
SRZ2961008	treatment	bromouridine (2 mM)	-30 min	0 min	30 min
	treatment	ultraviolet C (1 J/m^2/s)	-1820 s	-1800 s	20 s
SRZ2961012	treatment	bromouridine (2 mM)	-30 min	0 min	30 min
	treatment	ultraviolet C (1 J/m^2/s)	-1820 s	-1800 s	20 s

**Sample metrics**
Sample name	Raw read length	Trim read depth	Duplication proportion	Proportion reads mapped	Exon/intron ratio	Unique read proportion	Sample QC score	Sample NRO score
SRZ2960994	52	88,711,957	0.77505	0.9731	4.48204	0.34242	3	2
SRZ2960996	52	91,998,094	0.9096	0.9513	16.8487	0.30575	4	5
SRZ2960998	52	85,615,888	0.86279	0.9727	4.19358	0.30567	4	2
SRZ2961000	52	84,687,539	0.91026	0.973	3.90418	0.24132	4	2
SRZ2961002	52	61,300,706	0.50339	0.9647	1.81134	0.70676	2	2
SRZ2961004	52	58,272,807	0.91732	0.9703	3.73916	0.23295	4	2
SRZ2961006	52	53,335,926	0.87091	0.9419	2.91734	0.31666	4	2
SRZ2961008	52	49,309,831	0.7034	0.9582	5.38209	0.38343	3	3
SRZ2961012	52	57,107,156	0.65838	0.9587	4.86087	0.45998	3	2

**Bidirectionals**
Sample name	Tfit total bidirs	Tfit promoter bidirs	Tfit intronic bidirs	Tfit intergenic bidirs	dREG total bidirs	dREG promoter bidirs	dREG intronic bidirs	dREG intergenic bidirs
SRZ2960994	6075	1820	2922	460	8021	2301	3519	1477
SRZ2960996	4498	792	2263	251	7382	892	4393	896
SRZ2960998	10183	3078	5938	706	8499	2646	4196	1297
SRZ2961000	14668	4762	8327	1052	9085	3406	3870	1417
SRZ2961002	4154	858	2466	378	8552	1504	5404	1576
SRZ2961004	10409	2160	6531	974	6050	1552	3718	794
SRZ2961006	13448	2563	8384	1915	8915	2049	5570	1434
SRZ2961008	28754	8317	14083	3585	14829	4447	6887	2155
SRZ2961012	29195	8311	14261	4110	16726	4733	7972	2728