DBNascent | Samples

SRR8429046,SRR8429047,SRR8429048,...

**Downloads**
Gene read counts	Bidirectional read counts	Tfit regions	dREG regions
ZIP archive	ZIP archive	ZIP archive	ZIP archive
For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives.

**Technical details**
Sample name	Sample ID	Paper identifier	Protocol	Library prep	Control/Experimental	Wildtype & Untreated	QC score	Replicate
SRR8429046	2164	Sasse2019nascent	GRO-seq	random primed	control	True	2	1
SRR8429047	2165	Sasse2019nascent	GRO-seq	random primed	control	True	4	2
SRR8429048	2166	Sasse2019nascent	GRO-seq	random primed	experimental	False	4	1
SRR8429049	2167	Sasse2019nascent	GRO-seq	random primed	experimental	False	3	2
SRR8429050	2168	Sasse2019nascent	GRO-seq	random primed	experimental	False	4	1
SRR8429051	2169	Sasse2019nascent	GRO-seq	random primed	experimental	False	4	2
SRR8429052	2170	Sasse2019nascent	GRO-seq	random primed	experimental	False	4	1
SRR8429053	2171	Sasse2019nascent	GRO-seq	random primed	experimental	False	4	2
SRR8429054	2172	Sasse2019nascent	GRO-seq	random primed	control	True	3	1
SRR8429055	2173	Sasse2019nascent	GRO-seq	random primed	control	True	4	2
SRR8429056	2174	Sasse2019nascent	GRO-seq	random primed	experimental	False	3	1
SRR8429057	2175	Sasse2019nascent	GRO-seq	random primed	experimental	False	4	2
SRR8429058	2176	Sasse2019nascent	GRO-seq	random primed	experimental	False	3	1
SRR8429059	2177	Sasse2019nascent	GRO-seq	random primed	experimental	False	4	2
SRR8429060	2178	Sasse2019nascent	GRO-seq	random primed	experimental	False	3	1
SRR8429061	2179	Sasse2019nascent	GRO-seq	random primed	experimental	False	4	2

**Cellular details**
Sample name	Organism	Sample type	Cell type	Clone/Individual	Strain	Genotype	Construct
SRR8429046	H. sapiens	cell line	BEAS-2B
SRR8429047	H. sapiens	cell line	BEAS-2B
SRR8429048	H. sapiens	cell line	BEAS-2B
SRR8429049	H. sapiens	cell line	BEAS-2B
SRR8429050	H. sapiens	cell line	BEAS-2B
SRR8429051	H. sapiens	cell line	BEAS-2B
SRR8429052	H. sapiens	cell line	BEAS-2B
SRR8429053	H. sapiens	cell line	BEAS-2B
SRR8429054	H. sapiens	cell line	BEAS-2B
SRR8429055	H. sapiens	cell line	BEAS-2B
SRR8429056	H. sapiens	cell line	BEAS-2B
SRR8429057	H. sapiens	cell line	BEAS-2B
SRR8429058	H. sapiens	cell line	BEAS-2B
SRR8429059	H. sapiens	cell line	BEAS-2B
SRR8429060	H. sapiens	cell line	BEAS-2B
SRR8429061	H. sapiens	cell line	BEAS-2B

**Conditions**
Sample name	Condition type	Treatment	Start time	End time	Duration
SRR8429046	vehicle	ethanol	-10 min	0 min	10 min
SRR8429047	vehicle	ethanol	-10 min	0 min	10 min
SRR8429048	treatment	TNF-alpha (20 ng/mL)	-10 min	0 min	10 min
SRR8429049	treatment	TNF-alpha (20 ng/mL)	-10 min	0 min	10 min
SRR8429050	treatment	dexamethasone (100 nM)	-10 min	0 min	10 min
SRR8429051	treatment	dexamethasone (100 nM)	-10 min	0 min	10 min
SRR8429052	treatment	TNF-alpha (20 ng/mL)	-10 min	0 min	10 min
	treatment	dexamethasone (100 nM)	-10 min	0 min	10 min
SRR8429053	treatment	TNF-alpha (20 ng/mL)	-10 min	0 min	10 min
	treatment	dexamethasone (100 nM)	-10 min	0 min	10 min
SRR8429054	vehicle	ethanol	-30 min	0 min	30 min
SRR8429055	vehicle	ethanol	-30 min	0 min	30 min
SRR8429056	treatment	TNF-alpha (20 ng/mL)	-30 min	0 min	30 min
SRR8429057	treatment	TNF-alpha (20 ng/mL)	-30 min	0 min	30 min
SRR8429058	treatment	dexamethasone (100 nM)	-30 min	0 min	30 min
SRR8429059	treatment	dexamethasone (100 nM)	-30 min	0 min	30 min
SRR8429060	treatment	TNF-alpha (20 ng/mL)	-30 min	0 min	30 min
	treatment	dexamethasone (100 nM)	-30 min	0 min	30 min
SRR8429061	treatment	TNF-alpha (20 ng/mL)	-30 min	0 min	30 min
	treatment	dexamethasone (100 nM)	-30 min	0 min	30 min

**Sample metrics**
Sample name	Raw read length	Trim read depth	Duplication proportion	Proportion reads mapped	Exon/intron ratio	Unique read proportion	Sample QC score	Sample NRO score
SRR8429046	151	83,424,668	0.57038	0.9589	2.60852	0.67654	2	1
SRR8429047	151	105,288,056	0.87437	0.9348	1.79304	0.51573	4	1
SRR8429048	151	81,855,147	0.90412	0.9476	3.28634	0.41255	4	2
SRR8429049	151	109,085,879	0.73683	0.9322	2.23884	0.63386	3	1
SRR8429050	151	100,073,137	0.91148	0.9119	2.66902	0.42391	4	1
SRR8429051	151	107,648,879	0.84288	0.9291	2.0045	0.54021	4	1
SRR8429052	151	116,526,720	0.83484	0.906	2.09518	0.58421	4	1
SRR8429053	151	59,057,507	0.93115	0.7815	2.98381	0.17049	4	1
SRR8429054	151	56,099,192	0.6644	0.9129	2.97579	0.60666	3	1
SRR8429055	151	80,457,374	0.90899	0.8922	2.15301	0.37812	4	1
SRR8429056	151	74,153,519	0.66575	0.9283	2.64176	0.58779	3	1
SRR8429057	151	108,866,146	0.88186	0.91	1.73521	0.48054	4	1
SRR8429058	151	75,327,780	0.66986	0.8937	2.56114	0.64418	3	1
SRR8429059	151	112,537,299	0.81482	0.9391	1.8591	0.57401	4	1
SRR8429060	151	79,161,306	0.68703	0.9122	2.6458	0.57662	3	1
SRR8429061	151	80,085,758	0.81565	0.3968	2.1405	0.37597	4	1

**Bidirectionals**
Sample name	Tfit total bidirs	Tfit promoter bidirs	Tfit intronic bidirs	Tfit intergenic bidirs	dREG total bidirs	dREG promoter bidirs	dREG intronic bidirs	dREG intergenic bidirs
SRR8429046	38102	15100	13095	9303	29841	8076	13582	7056
SRR8429047	26839	10343	11068	5031	19467	7874	7882	3345
SRR8429048	22535	8087	9737	4103	17239	7137	6855	2748
SRR8429049	36081	12986	13802	8752	29126	8012	13364	6752
SRR8429050	24077	8607	10330	4637	18310	7582	7454	3092
SRR8429051	29921	10917	12331	6367	22683	8116	9756	4360
SRR8429052	31928	11561	12521	7347	24052	7975	10541	4975
SRR8429053	10129	3174	4905	1593	5964	3072	2168	839
SRR8429054	36803	13556	14104	7811	24371	7442	10636	5307
SRR8429055	20186	7854	8886	3029	13893	6548	5287	1980
SRR8429056	36827	12441	14193	8941	26613	6936	12171	6211
SRR8429057	24204	8530	10373	4675	17615	6595	7393	3153
SRR8429058	40335	14241	15568	8914	26657	7471	12042	5941
SRR8429059	32085	12499	12758	6494	24454	7874	10993	4844
SRR8429060	36658	11816	14585	8757	26613	6854	12304	6008
SRR8429061	19142	6614	8437	3331	12793	5497	5111	2021