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SRR1233867,SRR1233869,SRR1233870,...
| Gene read counts | Bidirectional read counts | Tfit regions | dREG regions |
| ZIP archive | ZIP archive | ZIP archive | ZIP archive |
| For TDF visualization files please see individual sample downloads or dataset pages for prebuilt archives. | |||
| Sample name | Sample ID | Paper identifier | Protocol | Library prep | Control/Experimental | QC score | Replicate | Outlier? |
| SRR1233867 | 2376 | Step2014antidiabetic | GRO-seq | circularization | control | 2 | 1 | No |
| SRR1233869 | 2378 | Step2014antidiabetic | GRO-seq | circularization | experimental | 2 | 1 | No |
| SRR1233870 | 2379 | Step2014antidiabetic | GRO-seq | circularization | experimental | 2 | 1 | No |
| SRR1233872 | 2381 | Step2014antidiabetic | GRO-seq | circularization | control | 3 | 2 | No |
| SRR1233873 | 2382 | Step2014antidiabetic | GRO-seq | circularization | experimental | 5 | 2 | No |
| SRR1233875 | 2384 | Step2014antidiabetic | GRO-seq | circularization | experimental | 3 | 2 | No |
| SRR1233876 | 2385 | Step2014antidiabetic | GRO-seq | circularization | experimental | 3 | 2 | No |
| SRR1233868 | 2377 | Step2014antidiabetic | GRO-seq | circularization | experimental | 2 | 1 | No |
| SRR1233871 | 2380 | Step2014antidiabetic | GRO-seq | circularization | experimental | 2 | 1 | No |
| SRR1233874 | 2383 | Step2014antidiabetic | GRO-seq | circularization | experimental | 3 | 2 | No |
| Sample name | Organism | Sample type | Cell type | Clone/Individual | Strain | Genotype | Construct |
| SRR1233867 | M. musculus | cell line | 3T3-L1 | ||||
| SRR1233869 | M. musculus | cell line | 3T3-L1 | ||||
| SRR1233870 | M. musculus | cell line | 3T3-L1 | ||||
| SRR1233872 | M. musculus | cell line | 3T3-L1 | ||||
| SRR1233873 | M. musculus | cell line | 3T3-L1 | ||||
| SRR1233875 | M. musculus | cell line | 3T3-L1 | ||||
| SRR1233876 | M. musculus | cell line | 3T3-L1 | ||||
| SRR1233868 | M. musculus | cell line | 3T3-L1 | ||||
| SRR1233871 | M. musculus | cell line | 3T3-L1 | ||||
| SRR1233874 | M. musculus | cell line | 3T3-L1 |
| Sample name | Condition type | Treatment | Start time | End time | Duration |
| SRR1233867 | no treatment | None | None | None | |
| SRR1233869 | treatment | rosiglitazone (1 microM) | -30 min | 0 min | 30 min |
| SRR1233870 | treatment | rosiglitazone (1 microM) | -1 hr | 0 hr | 1 hr |
| SRR1233872 | no treatment | None | None | None | |
| SRR1233873 | treatment | rosiglitazone (1 microM) | -10 min | 0 min | 10 min |
| SRR1233875 | treatment | rosiglitazone (1 microM) | -1 hr | 0 hr | 1 hr |
| SRR1233876 | treatment | rosiglitazone (1 microM) | -3 hr | 0 hr | 3 hr |
| SRR1233868 | treatment | rosiglitazone (1 microM) | -10 min | 0 min | 10 min |
| SRR1233871 | treatment | rosiglitazone (1 microM) | -3 hr | 0 hr | 3 hr |
| SRR1233874 | treatment | rosiglitazone (1 microM) | -30 min | 0 min | 30 min |
| Sample name | Raw read length | Trim read depth | Duplication proportion | Proportion reads mapped | Exon/intron ratio | Unique read proportion | Sample QC score | Sample NRO score |
| SRR1233867 | 50 | 155,033,276 | 0.57134 | 0.6954 | 3.00417 | 0.60863 | 2 | 2 |
| SRR1233869 | 50 | 156,429,241 | 0.59054 | 0.6384 | 3.30166 | 0.54709 | 2 | 2 |
| SRR1233870 | 50 | 168,240,341 | 0.5989 | 0.712 | 3.53737 | 0.5423 | 2 | 2 |
| SRR1233872 | 50 | 197,132,427 | 0.68529 | 0.618 | 2.25749 | 0.64497 | 3 | 1 |
| SRR1233873 | 50 | 151,850,383 | 0.95378 | 0.6395 | 2.87193 | 0.27468 | 5 | 1 |
| SRR1233875 | 50 | 166,036,334 | 0.72005 | 0.5716 | 3.01511 | 0.50673 | 3 | 2 |
| SRR1233876 | 50 | 141,915,785 | 0.73576 | 0.5494 | 2.85223 | 0.48924 | 3 | 1 |
| SRR1233868 | 50 | 149,554,326 | 0.53588 | 0.7601 | 2.86248 | 0.63647 | 2 | 1 |
| SRR1233871 | 50 | 153,198,314 | 0.59909 | 0.6248 | 3.4632 | 0.52058 | 2 | 2 |
| SRR1233874 | 50 | 161,902,884 | 0.72268 | 0.491 | 3.17972 | 0.45645 | 3 | 2 |
| Sample name | Tfit total bidirs | Tfit promoter bidirs | Tfit intronic bidirs | Tfit intergenic bidirs | dREG total bidirs | dREG promoter bidirs | dREG intronic bidirs | dREG intergenic bidirs |
| SRR1233867 | 33490 | 11068 | 9404 | 10614 | 35769 | 7493 | 14515 | 11729 |
| SRR1233869 | 30569 | 10299 | 8533 | 9254 | 32098 | 7260 | 12814 | 10043 |
| SRR1233870 | 30021 | 11377 | 8114 | 8201 | 33294 | 7375 | 13366 | 10423 |
| SRR1233872 | 37811 | 11905 | 11404 | 11765 | 37667 | 8165 | 15329 | 12278 |
| SRR1233873 | 11619 | 4093 | 4147 | 2089 | 9240 | 4571 | 2447 | 1689 |
| SRR1233875 | 23670 | 8474 | 7360 | 5485 | 23865 | 6722 | 8953 | 6432 |
| SRR1233876 | 26414 | 10104 | 8048 | 6012 | 23518 | 7189 | 8683 | 6209 |
| SRR1233868 | 33965 | 11146 | 9049 | 11185 | 38359 | 7419 | 15912 | 12783 |
| SRR1233871 | 27998 | 10732 | 7607 | 7345 | 28611 | 7082 | 11219 | 8405 |
| SRR1233874 | 25845 | 8024 | 8785 | 5912 | 23361 | 6501 | 8610 | 6100 |
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