DBNascent | Samples

SRR929978,SRR929979,SRR929980,...

**Downloads**
Gene read counts	Bidirectional read counts	Tfit regions	dREG regions
ZIP archive	ZIP archive	ZIP archive	ZIP archive
For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives.

**Technical details**
Sample name	Sample ID	Paper identifier	Protocol	Library prep	Control/Experimental	Wildtype & Untreated	QC score	Replicate
SRR929978	2520	Veloso2013genome-wide	Bru-seq	ligation	experimental	False	4	1
SRR929979	2521	Veloso2013genome-wide	Bru-seq	ligation	experimental	False	4	1
SRR929980	2522	Veloso2013genome-wide	Bru-seq	ligation	experimental	False	3	1
SRR929983	2523	Veloso2013genome-wide	Bru-seq	ligation	experimental	False	4	1
SRR929984	2524	Veloso2013genome-wide	Bru-seq	ligation	experimental	False	4	1
SRR929985	2525	Veloso2013genome-wide	Bru-seq	ligation	experimental	False	4	1
SRZ929970	2526	Veloso2013genome-wide	Bru-seq	ligation	control	True	1	1
SRZ929974	2527	Veloso2013genome-wide	Bru-seq	ligation	control	True	1	2
SRZ929981	2528	Veloso2013genome-wide	Bru-seq	ligation	control	False	2	1

**Cellular details**
Sample name	Organism	Sample type	Cell type	Clone/Individual	Strain	Genotype	Construct
SRR929978	H. sapiens	cell line	HF1
SRR929979	H. sapiens	cell line	HF1
SRR929980	H. sapiens	cell line	HF1
SRR929983	H. sapiens	primary cell	skin fibroblast	GM00739		Csb CS1AN mut
SRR929984	H. sapiens	primary cell	skin fibroblast	GM00739		Csb CS1AN mut
SRR929985	H. sapiens	primary cell	skin fibroblast	GM00739		Csb CS1AN mut
SRZ929970	H. sapiens	cell line	HF1
SRZ929974	H. sapiens	cell line	HF1
SRZ929981	H. sapiens	primary cell	skin fibroblast	GM00739		Csb CS1AN mut

**Conditions**
Sample name	Condition type	Treatment	Start time	End time	Duration
SRR929978	treatment	bromouridine (2 mM)	-15 min	0 min	15 min
	treatment	camptothecin (20 microM)	-60 min	0 min	1 hr
SRR929979	treatment	bromouridine (2 mM)	-15 min	0 min	15 min
	treatment	camptothecin (20 microM)	-75 min	-15 min	1 hr
SRR929980	treatment	bromouridine (2 mM)	-15 min	0 min	15 min
	treatment	camptothecin (20 microM)	-90 min	-30 min	1 hr
SRR929983	treatment	bromouridine (2 mM)	-15 min	0 min	15 min
	treatment	camptothecin (20 microM)	-60 min	0 min	1 hr
SRR929984	treatment	bromouridine (2 mM)	-15 min	0 min	15 min
	treatment	camptothecin (20 microM)	-75 min	-15 min	1 hr
SRR929985	treatment	bromouridine (2 mM)	-15 min	0 min	15 min
	treatment	camptothecin (20 microM)	-90 min	-30 min	1 hr
SRZ929970	treatment	bromouridine (2 mM)	-30 min	0 min	30 min
SRZ929974	treatment	bromouridine (2 mM)	-30 min	0 min	30 min
SRZ929981	treatment	bromouridine (2 mM)	-30 min	0 min	30 min

**Sample metrics**
Sample name	Raw read length	Trim read depth	Duplication proportion	Proportion reads mapped	Exon/intron ratio	Unique read proportion	Sample QC score	Sample NRO score
SRR929978	52	84,142,851	0.91677	0.9761	3.68892	0.27245	4	2
SRR929979	52	75,761,022	0.89688	0.9719	2.85315	0.37115	4	1
SRR929980	52	58,737,461	0.74301	0.9718	2.26667	0.52437	3	1
SRR929983	51	75,076,807	0.90093	0.9713	4.6009	0.22688	4	2
SRR929984	51	54,001,497	0.83627	0.9753	4.66367	0.22742	4	2
SRR929985	51	58,452,705	0.83183	0.9735	2.98817	0.28532	4	2
SRZ929970	52	59,405,504	0.39765	0.9554	2.75161	0.75398	1	1
SRZ929974	52	49,626,227	0.42346	0.9578	3.17575	0.69053	1	2
SRZ929981	52	67,584,383	0.57286	0.9641	1.59829	0.6771	2	2

**Bidirectionals**
Sample name	Tfit total bidirs	Tfit promoter bidirs	Tfit intronic bidirs	Tfit intergenic bidirs	dREG total bidirs	dREG promoter bidirs	dREG intronic bidirs	dREG intergenic bidirs
SRR929978	7445	1918	4547	294	5658	1907	3015	491
SRR929979	3993	946	2311	239	3925	1177	2097	425
SRR929980	4713	1191	2641	368	5803	1606	3265	677
SRR929983	4226	716	2339	148	4133	1116	2086	507
SRR929984	3964	578	1973	209	3497	787	1741	538
SRR929985	2826	415	1497	196	3023	654	1539	520
SRZ929970	11133	3464	5580	694	12844	3111	6100	2345
SRZ929974	11452	3411	6026	642	10947	2880	5133	1712
SRZ929981	3465	752	1840	399	7955	1214	4633	1806