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SRZ2820481,SRZ2820483,SRZ2820485,...
| Gene read counts | Bidirectional read counts | Tfit regions | dREG regions |
| ZIP archive | ZIP archive | ZIP archive | ZIP archive |
| For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives. | |||
| Sample name | Sample ID | Paper identifier | Protocol | Library prep | Control/Experimental | Wildtype & Untreated | QC score | Replicate |
| SRZ2820481 | 2642 | Wei2016long | GRO-seq | ligation | experimental | False | 1 | 1 |
| SRZ2820483 | 2643 | Wei2016long | GRO-seq | ligation | experimental | False | 1 | 2 |
| SRZ2820485 | 2644 | Wei2016long | GRO-seq | ligation | experimental | False | 3 | 3 |
| SRZ2820487 | 2645 | Wei2016long | GRO-seq | ligation | experimental | False | 2 | 1 |
| SRZ2820489 | 2646 | Wei2016long | GRO-seq | ligation | experimental | False | 2 | 2 |
| SRZ2820491 | 2647 | Wei2016long | GRO-seq | ligation | experimental | False | 2 | 3 |
| Sample name | Organism | Sample type | Cell type | Clone/Individual | Strain | Genotype | Construct |
| SRZ2820481 | M. musculus | primary cell | NSPC | 129/Sve | Atm -/- | ||
| SRZ2820483 | M. musculus | primary cell | NSPC | 129/Sve | Atm -/- | ||
| SRZ2820485 | M. musculus | primary cell | NSPC | 129/Sve | Atm -/- | ||
| SRZ2820487 | M. musculus | primary cell | NSPC | 129/Sve | Xrcc4 -/-; p53 -/- | ||
| SRZ2820489 | M. musculus | primary cell | NSPC | 129/Sve | Xrcc4 -/-; p53 -/- | ||
| SRZ2820491 | M. musculus | primary cell | NSPC | 129/Sve | Xrcc4 -/-; p53 -/- |
| Sample name | Condition type | Treatment | Start time | End time | Duration |
| SRZ2820481 | no treatment | None | None | None | |
| SRZ2820483 | no treatment | None | None | None | |
| SRZ2820485 | no treatment | None | None | None | |
| SRZ2820487 | no treatment | None | None | None | |
| SRZ2820489 | no treatment | None | None | None | |
| SRZ2820491 | no treatment | None | None | None |
| Sample name | Raw read length | Trim read depth | Duplication proportion | Proportion reads mapped | Exon/intron ratio | Unique read proportion | Sample QC score | Sample NRO score |
| SRZ2820481 | 51 | 61,763,545 | 0.47154 | 0.8294 | 2.39006 | 0.76361 | 1 | 1 |
| SRZ2820483 | 51 | 70,668,642 | 0.44101 | 0.8405 | 2.50094 | 0.78366 | 1 | 1 |
| SRZ2820485 | 51 | 91,197,236 | 0.75423 | 0.8438 | 2.23399 | 0.66391 | 3 | 1 |
| SRZ2820487 | 51 | 48,870,873 | 0.62121 | 0.8674 | 2.34332 | 0.67917 | 2 | 1 |
| SRZ2820489 | 51 | 113,979,263 | 0.64689 | 0.89 | 2.46391 | 0.77469 | 2 | 1 |
| SRZ2820491 | 51 | 62,854,564 | 0.51096 | 0.8898 | 2.79813 | 0.76342 | 2 | 1 |
| Sample name | Tfit total bidirs | Tfit promoter bidirs | Tfit intronic bidirs | Tfit intergenic bidirs | dREG total bidirs | dREG promoter bidirs | dREG intronic bidirs | dREG intergenic bidirs |
| SRZ2820481 | 36679 | 10538 | 13630 | 7259 | 30864 | 6252 | 12749 | 7567 |
| SRZ2820483 | 39435 | 10895 | 14734 | 8330 | 34838 | 6403 | 14814 | 9114 |
| SRZ2820485 | 28356 | 8798 | 10739 | 4619 | 25256 | 6280 | 9866 | 5372 |
| SRZ2820487 | 28363 | 8999 | 11157 | 4144 | 23229 | 6582 | 9188 | 4156 |
| SRZ2820489 | 35186 | 10725 | 12948 | 7114 | 39801 | 7445 | 17859 | 10266 |
| SRZ2820491 | 35325 | 11047 | 13036 | 6483 | 33215 | 7290 | 14319 | 7363 |
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