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Downloads

Gene read counts	Bidirectional read counts	Tfit regions	dREG regions
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For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives.

Technical details

Sample name	Sample ID	Paper identifier	Protocol	Library prep	Control/Experimental	Wildtype & Untreated	QC score	Replicate
SRR3713700	2828	Zhao2016high	PRO-seq	ligation	control	True	1	1
SRR3713701	2829	Zhao2016high	PRO-seq	ligation	experimental	False	1	1
SRR3713702	2830	Zhao2016high	PRO-seq	ligation	experimental	False	1	1
SRR3713703	2831	Zhao2016high	PRO-seq	ligation	control	True	1	1
SRR3713704	2832	Zhao2016high	PRO-seq	ligation	experimental	False	1	1
SRR3713705	2833	Zhao2016high	PRO-seq	ligation	experimental	False	1	1
SRR3713712	2834	Zhao2016high	PRO-seq	ligation	control	True	1	1
SRR3713713	2835	Zhao2016high	PRO-seq	ligation	control	True	2	2
SRR3713714	2836	Zhao2016high	PRO-seq	ligation	experimental	False	2	1
SRR3713715	2837	Zhao2016high	PRO-seq	ligation	experimental	False	2	2
SRR3713716	2838	Zhao2016high	PRO-seq	ligation	experimental	False	2	1
SRR3713717	2839	Zhao2016high	PRO-seq	ligation	experimental	False	2	2
SRR3713718	2840	Zhao2016high	PRO-seq	ligation	control	True	2	1
SRR3713719	2841	Zhao2016high	PRO-seq	ligation	experimental	False	3	1

Cellular details

Sample name	Organism	Sample type	Cell type	Clone/Individual	Strain	Genotype	Construct
SRR3713700	H. sapiens	cell line	Kasumi-1
SRR3713701	H. sapiens	cell line	Kasumi-1
SRR3713702	H. sapiens	cell line	Kasumi-1
SRR3713703	H. sapiens	cell line	Kasumi-1
SRR3713704	H. sapiens	cell line	Kasumi-1
SRR3713705	H. sapiens	cell line	Kasumi-1
SRR3713712	H. sapiens	cell line	Kasumi-1
SRR3713713	H. sapiens	cell line	Kasumi-1
SRR3713714	H. sapiens	cell line	Kasumi-1
SRR3713715	H. sapiens	cell line	Kasumi-1
SRR3713716	H. sapiens	cell line	Kasumi-1
SRR3713717	H. sapiens	cell line	Kasumi-1
SRR3713718	H. sapiens	primary cell	acute myeloid leukemia cell
SRR3713719	H. sapiens	primary cell	acute myeloid leukemia cell

Conditions

Sample name	Condition type	Treatment	Start time	End time	Duration
SRR3713700	vehicle	DMSO	-1 hr	0 hr	1 hr
SRR3713701	treatment	JQ1 (250 nM)	-1 hr	0 hr	1 hr
SRR3713702	treatment	MS417 (125 nM)	-1 hr	0 hr	1 hr
SRR3713703	vehicle	DMSO	-3 hr	0 hr	3 hr
SRR3713704	treatment	JQ1 (250 nM)	-3 hr	0 hr	3 hr
SRR3713705	treatment	MS417 (125 nM)	-3 hr	0 hr	3 hr
SRR3713712	no treatment		None	None	None
SRR3713713	no treatment		None	None	None
SRR3713714	treatment	JQ1 (250 nM)	-15 min	0 min	15 min
SRR3713715	treatment	JQ1 (250 nM)	-15 min	0 min	15 min
SRR3713716	treatment	JQ1 (250 nM)	-30 min	0 min	30 min
SRR3713717	treatment	JQ1 (250 nM)	-30 min	0 min	30 min
SRR3713718	vehicle	DMSO	-1 hr	0 hr	1 hr
SRR3713719	treatment	JQ1 (250 nM)	-1 hr	0 hr	1 hr

Sample metrics

Sample name	Raw read length	Trim read depth	Duplication proportion	Proportion reads mapped	Exon/intron ratio	Unique read proportion	Sample QC score	Sample NRO score
SRR3713700	51	33,024,069	0.36987	0.7633	5.00883	0.70809	1	3
SRR3713701	51	41,130,177	0.42684	0.7632	5.58529	0.67159	1	3
SRR3713702	51	46,234,711	0.42348	0.7809	5.71098	0.68424	1	3
SRR3713703	51	39,769,278	0.39814	0.7787	4.73052	0.70092	1	2
SRR3713704	51	33,720,122	0.41571	0.7811	5.29225	0.66278	1	3
SRR3713705	51	52,075,982	0.45714	0.8026	5.62689	0.66267	1	3
SRR3713712	75	40,613,311	0.46907	0.8772	3.15935	0.67476	1	2
SRR3713713	75	53,722,335	0.51884	0.857	3.35726	0.66251	2	2
SRR3713714	75	39,404,206	0.54297	0.8625	3.57506	0.59181	2	2
SRR3713715	75	60,100,000	0.56857	0.8788	3.65547	0.6164	2	2
SRR3713716	75	44,409,007	0.53235	0.868	3.65067	0.61318	2	2
SRR3713717	75	34,089,661	0.50092	0.8552	3.58415	0.61445	2	2
SRR3713718	51	37,605,587	0.59279	0.8087	3.21921	0.58138	2	2
SRR3713719	51	52,978,457	0.65456	0.8232	3.58172	0.5626	3	2

Bidirectionals

Sample name	Tfit total bidirs	Tfit promoter bidirs	Tfit intronic bidirs	Tfit intergenic bidirs	dREG total bidirs	dREG promoter bidirs	dREG intronic bidirs	dREG intergenic bidirs
SRR3713700	29763	11858	12681	5342	23853	8860	9957	4625
SRR3713701	30004	11690	13315	5014	24664	8655	10539	4776
SRR3713702	30372	12157	13314	5081	26569	8943	11529	5441
SRR3713703	34175	13591	14095	6777	27241	9054	11618	5968
SRR3713704	30493	12863	12748	5115	24112	9094	9924	4657
SRR3713705	34193	14560	14020	6065	28957	8969	12746	6337
SRR3713712	26897	9466	11958	5274	24402	8893	10411	4982
SRR3713713	29813	10469	13144	6078	28891	9304	13000	6294
SRR3713714	24662	9321	11130	3756	21623	8602	9102	3677
SRR3713715	27063	10183	12370	4314	27151	8899	12361	5413
SRR3713716	25833	9609	11667	4233	23603	8704	10235	4392
SRR3713717	23087	8641	10404	3585	20169	8469	8271	3339
SRR3713718	26190	10968	10990	3958	20966	8966	8340	3420
SRR3713719	25743	10812	11327	3522	22172	8773	9456	3532