DBNascent | Samples

SRR7184284,SRR7184285,SRR7184286,...

**Downloads**
Gene read counts	Bidirectional read counts	Tfit regions	dREG regions
ZIP archive	ZIP archive	ZIP archive	ZIP archive
For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives.

**Technical details**
Sample name	Sample ID	Paper identifier	Protocol	Library prep	Control/Experimental	Wildtype & Untreated	QC score	Replicate
SRR7184284	2842	Zhao2019myod	PRO-seq	ligation	control	True	2	2
SRR7184285	2843	Zhao2019myod	PRO-seq	ligation	experimental	False	2	2
SRR7184286	2844	Zhao2019myod	PRO-seq	ligation	experimental	False	2	2
SRR7184287	2845	Zhao2019myod	PRO-seq	ligation	experimental	False	2	2
SRZ7184276	2846	Zhao2019myod	PRO-seq	ligation	control	True	2	1
SRZ7184278	2847	Zhao2019myod	PRO-seq	ligation	experimental	False	3	1
SRZ7184280	2848	Zhao2019myod	PRO-seq	ligation	experimental	False	3	1
SRZ7184282	2849	Zhao2019myod	PRO-seq	ligation	experimental	False	2	1

**Cellular details**
Sample name	Organism	Sample type	Cell type	Clone/Individual	Strain	Genotype	Construct
SRR7184284	M. musculus	cell line	C2C12
SRR7184285	M. musculus	cell line	C2C12
SRR7184286	M. musculus	cell line	C2C12			MyoD -/-
SRR7184287	M. musculus	cell line	C2C12			MyoD -/-
SRZ7184276	M. musculus	cell line	C2C12
SRZ7184278	M. musculus	cell line	C2C12
SRZ7184280	M. musculus	cell line	C2C12			MyoD -/-
SRZ7184282	M. musculus	cell line	C2C12			MyoD -/-

**Conditions**
Sample name	Condition type	Treatment	Start time	End time	Duration
SRR7184284	no treatment		None	None	None
SRR7184285	treatment	myotube differentiation protocol	-48 hr	0 hr	2 day
SRR7184286	no treatment		None	None	None
SRR7184287	treatment	myotube differentiation protocol	-48 hr	0 hr	2 day
SRZ7184276	no treatment		None	None	None
SRZ7184278	treatment	myotube differentiation protocol	-48 hr	0 hr	2 day
SRZ7184280	no treatment		None	None	None
SRZ7184282	treatment	myotube differentiation protocol	-48 hr	0 hr	2 day

**Sample metrics**
Sample name	Raw read length	Trim read depth	Duplication proportion	Proportion reads mapped	Exon/intron ratio	Unique read proportion	Sample QC score	Sample NRO score
SRR7184284	50	19,232,151	0.5549	0.8046	5.3281	0.44763	2	3
SRR7184285	50	40,416,003	0.55459	0.8295	5.70028	0.52412	2	3
SRR7184286	50	53,587,241	0.57089	0.8441	8.07584	0.52245	2	4
SRR7184287	50	35,608,793	0.61775	0.8405	6.45068	0.43162	2	3
SRZ7184276	75	42,486,367	0.56854	0.8121	7.16274	0.45038	2	4
SRZ7184278	75	52,072,334	0.7723	0.868	8.06879	0.37463	3	4
SRZ7184280	75	42,942,671	0.67493	0.8383	7.97276	0.38087	3	4
SRZ7184282	75	53,167,671	0.59825	0.8651	6.27903	0.49907	2	3

**Bidirectionals**
Sample name	Tfit total bidirs	Tfit promoter bidirs	Tfit intronic bidirs	Tfit intergenic bidirs	dREG total bidirs	dREG promoter bidirs	dREG intronic bidirs	dREG intergenic bidirs
SRR7184284	36944	8182	14010	12288	28871	8330	10101	8580
SRR7184285	54214	12454	20889	17971	42403	8372	17356	13804
SRR7184286	53556	13342	19331	18212	42657	7667	17405	14537
SRR7184287	50954	11569	19865	16818	39451	8085	15984	12799
SRZ7184276	58236	13189	22780	19203	45132	8070	18580	15209
SRZ7184278	45974	10961	18583	13818	39527	8152	16250	12113
SRZ7184280	55686	12040	22615	18341	44726	8150	18569	14966
SRZ7184282	54263	13027	20320	18110	43230	7211	18001	14642