Franco2018enhancer
Downloads (all samples in dataset)
TDFs (visualization files) Zip archive 3.4 Gb
Read counts and bidirectional calls Zip archive 239 Mb
Paper Details
SRP accession SRP102238
GEO accession GSE96859
Protocol GRO-seq
Organisms H. sapiens
Library Prep circularization
Spike-in
Published Yes
Year 2018
First Author Franco
Last Author Kraus
DOI 10.1101/gr.226019.117
Full citation Hector L. Franco, Anusha Nagari, Venkat S. Malladi, Wenqian Li, Yuanxin Xi, Dana Richardson, Kendra L. Allton, Kaori Tanaka, Jing Li, Shino Murakami, Khandan Keyomarsi, Mark T. Bedford, Xiaobing Shi, Wei Li, Michelle C. Barton, Sharon Y.R. Dent, and W. Lee Kraus. Enhancer transcription reveals subtype-specific gene expression programs controlling breast cancer pathogenesis. Genome Research, 28(2):159-170, 2018.
Median QC score
Information
2.0
ATAC-seq? No
RNA-seq? Yes
ChIP-seq? Yes
3D Seq? No
Other Seq? No