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Paper Details
Franco2018enhancer
TDFs (visualization files) | Zip archive | 3.4 Gb |
Read counts and bidirectional calls | Zip archive | 239 Mb |
SRP accession | SRP102238 |
GEO accession | GSE96859 |
Protocol | GRO-seq |
Organisms | H. sapiens |
Library Prep | circularization |
Spike-in | |
Published | Yes |
Year | 2018 |
First Author | Franco |
Last Author | Kraus |
DOI | 10.1101/gr.226019.117 |
Full citation | Hector L. Franco, Anusha Nagari, Venkat S. Malladi, Wenqian Li, Yuanxin Xi, Dana Richardson, Kendra L. Allton, Kaori Tanaka, Jing Li, Shino Murakami, Khandan Keyomarsi, Mark T. Bedford, Xiaobing Shi, Wei Li, Michelle C. Barton, Sharon Y.R. Dent, and W. Lee Kraus. Enhancer transcription reveals subtype-specific gene expression programs controlling breast cancer pathogenesis. Genome Research, 28(2):159-170, 2018. |
Median QC score
|
2.0 |
ATAC-seq? | No |
RNA-seq? | Yes |
ChIP-seq? | Yes |
3D Seq? | No |
Other Seq? | No |