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SRR10669528,SRR10669529,SRR10669530,...
| Gene read counts | Bidirectional read counts | Tfit regions | dREG regions |
| ZIP archive | ZIP archive | ZIP archive | ZIP archive |
| For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives. | |||
| Sample name | Sample ID | Paper identifier | Protocol | Library prep | Control/Experimental | Wildtype & Untreated | QC score | Replicate |
| SRR10669528 | 231 | Bi2020enhancer | GRO-seq | circularization | control | False | 2 | 1 |
| SRR10669529 | 232 | Bi2020enhancer | GRO-seq | circularization | control | False | 3 | 1 |
| SRR10669530 | 233 | Bi2020enhancer | GRO-seq | circularization | experimental | False | 2 | 1 |
| SRR10669531 | 234 | Bi2020enhancer | GRO-seq | circularization | experimental | False | 2 | 1 |
| SRR8743256 | 235 | Bi2020enhancer | GRO-seq | circularization | control | True | 3 | 1 |
| SRR8743257 | 236 | Bi2020enhancer | GRO-seq | circularization | control | True | 3 | 2 |
| SRR8743258 | 237 | Bi2020enhancer | GRO-seq | circularization | control | False | 2 | 1 |
| SRR8743259 | 238 | Bi2020enhancer | GRO-seq | circularization | control | False | 2 | 2 |
| SRR8743260 | 239 | Bi2020enhancer | GRO-seq | circularization | control | False | 1 | 1 |
| SRR8743261 | 240 | Bi2020enhancer | GRO-seq | circularization | control | False | 1 | 1 |
| SRR8743262 | 241 | Bi2020enhancer | GRO-seq | circularization | experimental | False | 1 | 1 |
| SRR8743263 | 242 | Bi2020enhancer | GRO-seq | circularization | experimental | False | 2 | 1 |
| SRR8743264 | 243 | Bi2020enhancer | GRO-seq | circularization | control | False | 2 | 1 |
| SRR8743265 | 244 | Bi2020enhancer | GRO-seq | circularization | control | False | 1 | 1 |
| SRR8743266 | 245 | Bi2020enhancer | GRO-seq | circularization | experimental | False | 2 | 1 |
| SRR8743267 | 246 | Bi2020enhancer | GRO-seq | circularization | control | False | 1 | 1 |
| SRR8743268 | 247 | Bi2020enhancer | GRO-seq | circularization | experimental | False | 1 | 1 |
| Sample name | Organism | Sample type | Cell type | Clone/Individual | Strain | Genotype | Construct |
| SRR10669528 | H. sapiens | cell line | T47D | dox-inducible Jun (stable); shRNA control (stable) | |||
| SRR10669529 | H. sapiens | cell line | T47D | dox-inducible Jun (stable); shRNA control (stable) | |||
| SRR10669530 | H. sapiens | cell line | T47D | dox-inducible Jun (stable); shRNA Gata3 (stable) | |||
| SRR10669531 | H. sapiens | cell line | T47D | dox-inducible Jun (stable); shRNA Gata3 (stable) | |||
| SRR8743256 | H. sapiens | cell line | MCF7 | tamoxifen-sensitive | |||
| SRR8743257 | H. sapiens | cell line | MCF7 | tamoxifen-sensitive | |||
| SRR8743258 | H. sapiens | cell line | MCF7 | tamoxifen-resistant | |||
| SRR8743259 | H. sapiens | cell line | MCF7 | tamoxifen-resistant | |||
| SRR8743260 | H. sapiens | cell line | MCF7 | tamoxifen-sensitive | dox-inducible Jun (stable); shRNA control (stable) | ||
| SRR8743261 | H. sapiens | cell line | MCF7 | tamoxifen-sensitive | dox-inducible Jun (stable); shRNA control (stable) | ||
| SRR8743262 | H. sapiens | cell line | MCF7 | tamoxifen-sensitive | dox-inducible Jun (stable); shRNA Gata3 (stable) | ||
| SRR8743263 | H. sapiens | cell line | MCF7 | tamoxifen-sensitive | dox-inducible Jun (stable); shRNA Gata3 (stable) | ||
| SRR8743264 | H. sapiens | cell line | MCF7 | tamoxifen-resistant | |||
| SRR8743265 | H. sapiens | cell line | MCF7 | tamoxifen-sensitive | shRNA control (stable) | ||
| SRR8743266 | H. sapiens | cell line | MCF7 | tamoxifen-sensitive | shRNA Gata3 (stable) | ||
| SRR8743267 | H. sapiens | cell line | MCF7 | tamoxifen-resistant | shRNA control (stable) | ||
| SRR8743268 | H. sapiens | cell line | MCF7 | tamoxifen-resistant | shRNA Jun (stable) |
| Sample name | Condition type | Treatment | Start time | End time | Duration |
| SRR10669528 | no treatment | None | None | None | |
| SRR10669529 | treatment | doxycycline (1 microg/mL) | -2 day | 0 day | 2 day |
| SRR10669530 | no treatment | None | None | None | |
| SRR10669531 | treatment | doxycycline (1 microg/mL) | -2 day | 0 day | 2 day |
| SRR8743256 | no treatment | None | None | None | |
| SRR8743257 | no treatment | None | None | None | |
| SRR8743258 | treatment | hydroxytamoxifen (100 nM) | None | None | None |
| SRR8743259 | treatment | hydroxytamoxifen (100 nM) | None | None | None |
| SRR8743260 | no treatment | None | None | None | |
| SRR8743261 | treatment | doxycycline (1 microg/mL) | -2 day | 0 day | 2 day |
| SRR8743262 | no treatment | None | None | None | |
| SRR8743263 | treatment | doxycycline (1 microg/mL) | -2 day | 0 day | 2 day |
| SRR8743264 | no treatment | None | None | None | |
| SRR8743265 | no treatment | None | None | None | |
| SRR8743266 | no treatment | None | None | None | |
| SRR8743267 | treatment | hydroxytamoxifen (100 nM) | None | None | None |
| SRR8743268 | treatment | hydroxytamoxifen (100 nM) | None | None | None |
| Sample name | Raw read length | Trim read depth | Duplication proportion | Proportion reads mapped | Exon/intron ratio | Unique read proportion | Sample QC score | Sample NRO score |
| SRR10669528 | 54 | 40,750,984 | 0.62709 | 0.8714 | 4.45931 | 0.46493 | 2 | 2 |
| SRR10669529 | 54 | 58,663,060 | 0.67749 | 0.8837 | 4.34133 | 0.47514 | 3 | 2 |
| SRR10669530 | 54 | 41,755,912 | 0.6115 | 0.8795 | 3.9912 | 0.52835 | 2 | 2 |
| SRR10669531 | 54 | 47,955,982 | 0.59616 | 0.8826 | 3.7421 | 0.5663 | 2 | 2 |
| SRR8743256 | 51 | 54,280,150 | 0.67199 | 0.7945 | 4.43883 | 0.54394 | 3 | 2 |
| SRR8743257 | 51 | 100,552,986 | 0.68888 | 0.841 | 3.824 | 0.59899 | 3 | 2 |
| SRR8743258 | 51 | 45,575,822 | 0.60328 | 0.8185 | 3.69601 | 0.59517 | 2 | 2 |
| SRR8743259 | 51 | 69,762,040 | 0.60406 | 0.8241 | 3.6468 | 0.60426 | 2 | 2 |
| SRR8743260 | 51 | 37,487,786 | 0.42811 | 0.8996 | 3.23958 | 0.71623 | 1 | 2 |
| SRR8743261 | 51 | 53,583,405 | 0.4726 | 0.9135 | 3.08582 | 0.72264 | 1 | 2 |
| SRR8743262 | 51 | 40,493,118 | 0.45182 | 0.9065 | 3.17773 | 0.7059 | 1 | 2 |
| SRR8743263 | 51 | 46,906,269 | 0.52955 | 0.8979 | 3.22131 | 0.66521 | 2 | 2 |
| SRR8743264 | 51 | 48,059,018 | 0.61756 | 0.9206 | 3.17644 | 0.62925 | 2 | 2 |
| SRR8743265 | 51 | 43,087,617 | 0.42633 | 0.9308 | 3.04414 | 0.74334 | 1 | 2 |
| SRR8743266 | 51 | 45,667,970 | 0.54732 | 0.9227 | 3.16965 | 0.68545 | 2 | 2 |
| SRR8743267 | 51 | 36,034,421 | 0.42627 | 0.9177 | 3.09188 | 0.70993 | 1 | 2 |
| SRR8743268 | 51 | 40,906,253 | 0.42553 | 0.926 | 2.93289 | 0.72562 | 1 | 1 |
| Sample name | Tfit total bidirs | Tfit promoter bidirs | Tfit intronic bidirs | Tfit intergenic bidirs | dREG total bidirs | dREG promoter bidirs | dREG intronic bidirs | dREG intergenic bidirs |
| SRR10669528 | 23758 | 9773 | 9937 | 2962 | 15050 | 7772 | 5024 | 2228 |
| SRR10669529 | 26774 | 10559 | 11440 | 3633 | 18746 | 8567 | 6778 | 3225 |
| SRR10669530 | 24300 | 8711 | 10780 | 3434 | 15646 | 7381 | 5535 | 2540 |
| SRR10669531 | 23792 | 8568 | 10260 | 3697 | 16829 | 7415 | 6272 | 2987 |
| SRR8743256 | 25240 | 11845 | 9419 | 3765 | 20550 | 9210 | 7542 | 3689 |
| SRR8743257 | 28798 | 13195 | 10617 | 4828 | 27159 | 9370 | 11118 | 6302 |
| SRR8743258 | 23476 | 10327 | 9416 | 3441 | 18582 | 8553 | 7085 | 2987 |
| SRR8743259 | 26135 | 11825 | 10205 | 4191 | 23056 | 8957 | 9503 | 4427 |
| SRR8743260 | 26729 | 10498 | 11170 | 4227 | 18260 | 7699 | 6914 | 3398 |
| SRR8743261 | 27438 | 9572 | 12006 | 5022 | 21338 | 7721 | 8566 | 4662 |
| SRR8743262 | 27632 | 9834 | 11852 | 5085 | 19898 | 7827 | 7760 | 4048 |
| SRR8743263 | 26507 | 8842 | 11671 | 5085 | 19943 | 7730 | 7842 | 4121 |
| SRR8743264 | 25295 | 10632 | 10660 | 3236 | 17727 | 7532 | 6846 | 2964 |
| SRR8743265 | 28191 | 10514 | 12345 | 4408 | 19870 | 7677 | 7687 | 4024 |
| SRR8743266 | 26850 | 9311 | 12214 | 4083 | 18725 | 7504 | 7218 | 3590 |
| SRR8743267 | 23167 | 8545 | 10063 | 3762 | 16137 | 6683 | 6281 | 2844 |
| SRR8743268 | 29475 | 11379 | 13158 | 3934 | 17969 | 7302 | 7081 | 3065 |
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