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SRR5388630,SRR5388631,SRR5388632,...
| Gene read counts | Bidirectional read counts | Tfit regions | dREG regions |
| ZIP archive | ZIP archive | ZIP archive | ZIP archive |
| For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives. | |||
| Sample name | Sample ID | Paper identifier | Protocol | Library prep | Control/Experimental | Wildtype & Untreated | QC score | Replicate |
| SRR5388630 | 446 | Chen2018augmented | GRO-seq | ligation | experimental | False | 3 | 1 |
| SRR5388631 | 447 | Chen2018augmented | GRO-seq | ligation | experimental | False | 3 | 2 |
| SRR5388632 | 448 | Chen2018augmented | GRO-seq | ligation | control | False | 3 | 1 |
| SRR5388633 | 449 | Chen2018augmented | GRO-seq | ligation | control | False | 3 | 2 |
| SRR5388634 | 450 | Chen2018augmented | GRO-seq | ligation | control | False | 3 | 1 |
| SRR5388635 | 451 | Chen2018augmented | GRO-seq | ligation | control | False | 3 | 2 |
| SRR5388636 | 452 | Chen2018augmented | GRO-seq | ligation | experimental | False | 3 | 1 |
| SRR5388637 | 453 | Chen2018augmented | GRO-seq | ligation | experimental | False | 3 | 2 |
| SRR5388638 | 454 | Chen2018augmented | GRO-seq | ligation | control | False | 4 | 1 |
| SRR5388639 | 455 | Chen2018augmented | GRO-seq | ligation | control | False | 4 | 2 |
| SRR5388640 | 456 | Chen2018augmented | GRO-seq | ligation | experimental | False | 4 | 1 |
| SRR5388641 | 457 | Chen2018augmented | GRO-seq | ligation | experimental | False | 3 | 2 |
| SRR5388642 | 458 | Chen2018augmented | GRO-seq | ligation | control | False | 3 | 1 |
| SRR5388643 | 459 | Chen2018augmented | GRO-seq | ligation | control | False | 3 | 2 |
| SRR5388644 | 460 | Chen2018augmented | GRO-seq | ligation | control | False | 3 | 1 |
| SRR5388645 | 461 | Chen2018augmented | GRO-seq | ligation | control | False | 3 | 2 |
| Sample name | Organism | Sample type | Cell type | Clone/Individual | Strain | Genotype | Construct |
| SRR5388630 | H. sapiens | cell line | HEK293T | dox-inducible shRNA Srsf2 endogenous (stable); dox-inducible Srsf2 P95H exogenous (stable) | |||
| SRR5388631 | H. sapiens | cell line | HEK293T | dox-inducible shRNA Srsf2 endogenous (stable); dox-inducible Srsf2 P95H exogenous (stable) | |||
| SRR5388632 | H. sapiens | cell line | HEK293T | dox-inducible shRNA Srsf2 endogenous (stable); dox-inducible Srsf2 P95H exogenous (stable) | |||
| SRR5388633 | H. sapiens | cell line | HEK293T | dox-inducible shRNA Srsf2 endogenous (stable); dox-inducible Srsf2 P95H exogenous (stable) | |||
| SRR5388634 | H. sapiens | cell line | HEK293T | dox-inducible shRNA U2af35 endogenous (stable); dox-inducible U2af35 Q157P exogenous (stable) | |||
| SRR5388635 | H. sapiens | cell line | HEK293T | dox-inducible shRNA U2af35 endogenous (stable); dox-inducible U2af35 Q157P exogenous (stable) | |||
| SRR5388636 | H. sapiens | cell line | HEK293T | dox-inducible shRNA U2af35 endogenous (stable); dox-inducible U2af35 Q157P exogenous (stable) | |||
| SRR5388637 | H. sapiens | cell line | HEK293T | dox-inducible shRNA U2af35 endogenous (stable); dox-inducible U2af35 Q157P exogenous (stable) | |||
| SRR5388638 | H. sapiens | cell line | HEK293T | dox-inducible shRNA U2af35 endogenous (stable); dox-inducible U2af35 S34F exogenous (stable) | |||
| SRR5388639 | H. sapiens | cell line | HEK293T | dox-inducible shRNA U2af35 endogenous (stable); dox-inducible U2af35 S34F exogenous (stable) | |||
| SRR5388640 | H. sapiens | cell line | HEK293T | dox-inducible shRNA U2af35 endogenous (stable); dox-inducible U2af35 S34F exogenous (stable) | |||
| SRR5388641 | H. sapiens | cell line | HEK293T | dox-inducible shRNA U2af35 endogenous (stable); dox-inducible U2af35 S34F exogenous (stable) | |||
| SRR5388642 | H. sapiens | cell line | HEK293T | dox-inducible shRNA Srsf2 endogenous (stable); dox-inducible Srsf2 exogenous (stable) | |||
| SRR5388643 | H. sapiens | cell line | HEK293T | dox-inducible shRNA Srsf2 endogenous (stable); dox-inducible Srsf2 exogenous (stable) | |||
| SRR5388644 | H. sapiens | cell line | HEK293T | dox-inducible shRNA Srsf2 endogenous (stable); dox-inducible Srsf2 exogenous (stable) | |||
| SRR5388645 | H. sapiens | cell line | HEK293T | dox-inducible shRNA Srsf2 endogenous (stable); dox-inducible Srsf2 exogenous (stable) |
| Sample name | Condition type | Treatment | Start time | End time | Duration |
| SRR5388630 | treatment | doxycycline (1 microg/mL) | -5 hr | 0 hr | 5 hr |
| SRR5388631 | treatment | doxycycline (1 microg/mL) | -5 hr | 0 hr | 5 hr |
| SRR5388632 | no treatment | None | None | None | |
| SRR5388633 | no treatment | None | None | None | |
| SRR5388634 | no treatment | None | None | None | |
| SRR5388635 | no treatment | None | None | None | |
| SRR5388636 | treatment | doxycycline (1 microg/mL) | -5 hr | 0 hr | 5 hr |
| SRR5388637 | treatment | doxycycline (1 microg/mL) | -5 hr | 0 hr | 5 hr |
| SRR5388638 | no treatment | None | None | None | |
| SRR5388639 | no treatment | None | None | None | |
| SRR5388640 | treatment | doxycycline (1 microg/mL) | -5 hr | 0 hr | 5 hr |
| SRR5388641 | treatment | doxycycline (1 microg/mL) | -5 hr | 0 hr | 5 hr |
| SRR5388642 | treatment | doxycycline (1 microg/mL) | -5 hr | 0 hr | 5 hr |
| SRR5388643 | treatment | doxycycline (1 microg/mL) | -5 hr | 0 hr | 5 hr |
| SRR5388644 | no treatment | None | None | None | |
| SRR5388645 | no treatment | None | None | None |
| Sample name | Raw read length | Trim read depth | Duplication proportion | Proportion reads mapped | Exon/intron ratio | Unique read proportion | Sample QC score | Sample NRO score |
| SRR5388630 | 40 | 28,671,198 | 0.76598 | 0.9245 | 3.70545 | 0.25328 | 3 | 2 |
| SRR5388631 | 40 | 15,942,230 | 0.75585 | 0.9262 | 3.89189 | 0.25199 | 3 | 2 |
| SRR5388632 | 40 | 28,107,180 | 0.75667 | 0.9068 | 3.53086 | 0.26131 | 3 | 2 |
| SRR5388633 | 40 | 19,320,345 | 0.76636 | 0.8564 | 3.83333 | 0.24267 | 3 | 2 |
| SRR5388634 | 40 | 15,702,545 | 0.6619 | 0.8121 | 2.81081 | 0.34533 | 3 | 1 |
| SRR5388635 | 40 | 17,901,339 | 0.6928 | 0.8937 | 2.84314 | 0.3201 | 3 | 1 |
| SRR5388636 | 40 | 19,811,027 | 0.74486 | 0.8982 | 3.01356 | 0.27001 | 3 | 2 |
| SRR5388637 | 40 | 16,844,414 | 0.73175 | 0.91 | 2.98092 | 0.27824 | 3 | 1 |
| SRR5388638 | 41 | 12,002,974 | 0.75368 | 0.582 | 2.63717 | 0.24067 | 4 | 1 |
| SRR5388639 | 41 | 13,355,260 | 0.76062 | 0.5847 | 2.696 | 0.23781 | 4 | 1 |
| SRR5388640 | 41 | 11,601,902 | 0.76976 | 0.5718 | 2.87 | 0.22378 | 4 | 1 |
| SRR5388641 | 41 | 15,358,561 | 0.77764 | 0.5757 | 2.90152 | 0.22408 | 3 | 1 |
| SRR5388642 | 40 | 23,166,908 | 0.75113 | 0.8863 | 3.67913 | 0.26395 | 3 | 2 |
| SRR5388643 | 40 | 20,820,481 | 0.75395 | 0.8998 | 3.70486 | 0.25859 | 3 | 2 |
| SRR5388644 | 40 | 21,843,052 | 0.75428 | 0.8537 | 3.5411 | 0.2583 | 3 | 2 |
| SRR5388645 | 40 | 21,170,798 | 0.75993 | 0.8627 | 3.58214 | 0.25384 | 3 | 2 |
| Sample name | Tfit total bidirs | Tfit promoter bidirs | Tfit intronic bidirs | Tfit intergenic bidirs | dREG total bidirs | dREG promoter bidirs | dREG intronic bidirs | dREG intergenic bidirs |
| SRR5388630 | 21180 | 12087 | 7471 | 2299 | 16299 | 9849 | 5000 | 2040 |
| SRR5388631 | 14893 | 8790 | 5264 | 1437 | 13172 | 9020 | 3433 | 1381 |
| SRR5388632 | 20393 | 11695 | 7183 | 2140 | 15620 | 9563 | 4623 | 1968 |
| SRR5388633 | 15585 | 9392 | 5368 | 1372 | 12568 | 8631 | 3190 | 1216 |
| SRR5388634 | 15893 | 9366 | 5324 | 1517 | 10670 | 7316 | 2601 | 1169 |
| SRR5388635 | 18020 | 10527 | 6065 | 1819 | 12241 | 8089 | 3145 | 1459 |
| SRR5388636 | 17947 | 10713 | 5989 | 1654 | 12366 | 8292 | 3123 | 1351 |
| SRR5388637 | 15198 | 9241 | 4946 | 1298 | 10664 | 7464 | 2456 | 1090 |
| SRR5388638 | 6065 | 3953 | 1881 | 405 | 4807 | 3778 | 920 | 354 |
| SRR5388639 | 6685 | 4311 | 2060 | 442 | 5408 | 4184 | 1045 | 413 |
| SRR5388640 | 5004 | 3335 | 1469 | 316 | 3734 | 2963 | 659 | 293 |
| SRR5388641 | 6834 | 4483 | 2074 | 415 | 5421 | 4180 | 1079 | 420 |
| SRR5388642 | 19153 | 11016 | 6856 | 1926 | 15269 | 9650 | 4451 | 1767 |
| SRR5388643 | 17947 | 10500 | 6333 | 1767 | 14623 | 9507 | 4087 | 1620 |
| SRR5388644 | 17748 | 10264 | 6352 | 1702 | 13970 | 9176 | 3868 | 1524 |
| SRR5388645 | 17451 | 10263 | 6150 | 1590 | 13905 | 9184 | 3831 | 1481 |
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