DBNascent | Samples

SRR5714119,SRR5714120,SRR3407137,...

**Downloads**
Gene read counts	Bidirectional read counts	Tfit regions	dREG regions
ZIP archive	ZIP archive	ZIP archive	ZIP archive
For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives.

**Technical details**
Sample name	Sample ID	Paper identifier	Protocol	Library prep	Control/Experimental	Wildtype & Untreated	QC score	Replicate
SRR5714119	556	Daniel2018nuclear	GRO-seq	ligation	control	True	4	1
SRR5714120	557	Daniel2018nuclear	GRO-seq	ligation	experimental	False	4	1
SRR3407137	552	Daniel2018nuclear	GRO-seq	ligation	experimental	False	3	1
SRR3407138	553	Daniel2018nuclear	GRO-seq	ligation	control	True	3	1
SRR3407139	554	Daniel2018nuclear	GRO-seq	ligation	experimental	False	3	2
SRR3407140	555	Daniel2018nuclear	GRO-seq	ligation	control	True	3	2
SRR6687446	558	Daniel2018nuclear	GRO-seq	ligation	experimental	False	3	1

**Cellular details**
Sample name	Organism	Sample type	Cell type	Clone/Individual	Strain	Genotype	Construct
SRR5714119	M. musculus	primary cell	bone marrow derived macrophage		C57BL/6
SRR5714120	M. musculus	primary cell	bone marrow derived macrophage		C57BL/6
SRR3407137	M. musculus	primary cell	bone marrow derived macrophage		C57BL/6
SRR3407138	M. musculus	primary cell	bone marrow derived macrophage		C57BL/6
SRR3407139	M. musculus	primary cell	bone marrow derived macrophage		C57BL/6
SRR3407140	M. musculus	primary cell	bone marrow derived macrophage		C57BL/6
SRR6687446	M. musculus	primary cell	bone marrow derived macrophage		C57BL/6

**Conditions**
Sample name	Condition type	Treatment	Start time	End time	Duration
SRR5714119	vehicle	DMSO	-1 hr	0 hr	1 hr
SRR5714120	treatment	interleukin-4 (20 ng/microL)	-1 hr	0 hr	1 hr
SRR3407137	treatment	interleukin-4 (20 ng/microL)	-25 hr	-1 hr	1 day
	treatment	rosiglitazone (10 microM)	-1 hr	0 hr	1 hr
SRR3407138	treatment	interleukin-4 (20 ng/microL)	-25 hr	-1 hr	1 day
	vehicle	DMSO/ethanol	-1 hr	0 hr	1 hr
SRR3407139	treatment	interleukin-4 (20 ng/microL)	-25 hr	-1 hr	1 day
	treatment	rosiglitazone (10 microM)	-1 hr	0 hr	1 hr
SRR3407140	treatment	interleukin-4 (20 ng/microL)	-25 hr	-1 hr	1 day
	vehicle	DMSO/ethanol	-1 hr	0 hr	1 hr
SRR6687446	treatment	LG100268 (100 nM)	-1 hr	0 hr	1 hr
	treatment	interleukin-4 (20 ng/microL)	-25 hr	-1 hr	1 day

**Sample metrics**
Sample name	Raw read length	Trim read depth	Duplication proportion	Proportion reads mapped	Exon/intron ratio	Unique read proportion	Sample QC score	Sample NRO score
SRR5714119	35	65,574,863	0.93592	0.6677	2.13612	0.14894	4	1
SRR5714120	37	127,668,256	0.87425	0.6774	2.77968	0.30083	4	1
SRR3407137	30	24,122,094	0.68498	0.5224	3.63519	0.34094	3	2
SRR3407138	30	18,761,218	0.66818	0.4508	3.80441	0.33204	3	2
SRR3407139	30	22,076,552	0.67986	0.5229	3.46154	0.33769	3	2
SRR3407140	30	20,768,534	0.6509	0.4856	3.5473	0.35931	3	2
SRR6687446	36	22,144,517	0.7967	0.6016	3.02016	0.23455	3	2

**Bidirectionals**
Sample name	Tfit total bidirs	Tfit promoter bidirs	Tfit intronic bidirs	Tfit intergenic bidirs	dREG total bidirs	dREG promoter bidirs	dREG intronic bidirs	dREG intergenic bidirs
SRR5714119	10799	4906	3267	718	10042	5195	2534	839
SRR5714120	22175	9582	7279	2988	20182	6435	7377	4008
SRR3407137	7256	2372	2896	582	4831	2393	1202	511
SRR3407138	5554	1812	2185	415	3206	1684	769	262
SRR3407139	6646	1938	2715	655	3849	1799	1033	466
SRR3407140	6278	1950	2531	540	3544	1747	913	363
SRR6687446	7776	2461	3086	793	5143	2753	1214	414