DBNascent | Samples

SRR6453429,SRR6453430,SRR6453431,...

**Downloads**
Gene read counts	Bidirectional read counts	Tfit regions	dREG regions
ZIP archive	ZIP archive	ZIP archive	ZIP archive
For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives.

**Technical details**
Sample name	Sample ID	Paper identifier	Protocol	Library prep	Control/Experimental	Wildtype & Untreated	QC score	Replicate
SRR6453429	911	Guan2018diet	GRO-seq	circularization	experimental	False	4	1
SRR6453430	912	Guan2018diet	GRO-seq	circularization	experimental	False	4	1
SRR6453431	913	Guan2018diet	GRO-seq	circularization	experimental	False	4	1
SRR6453432	914	Guan2018diet	GRO-seq	circularization	experimental	False	4	1
SRR6453433	915	Guan2018diet	GRO-seq	circularization	experimental	False	3	1
SRR6453434	916	Guan2018diet	GRO-seq	circularization	experimental	False	4	1
SRR6453435	917	Guan2018diet	GRO-seq	circularization	experimental	False	4	1
SRR6453436	918	Guan2018diet	GRO-seq	circularization	experimental	False	4	1

**Cellular details**
Sample name	Organism	Sample type	Cell type	Clone/Individual	Strain	Genotype	Construct
SRR6453429	M. musculus	tissue	liver		C57BL/6J
SRR6453430	M. musculus	tissue	liver		C57BL/6J
SRR6453431	M. musculus	tissue	liver		C57BL/6J
SRR6453432	M. musculus	tissue	liver		C57BL/6J
SRR6453433	M. musculus	tissue	liver		C57BL/6J
SRR6453434	M. musculus	tissue	liver		C57BL/6J
SRR6453435	M. musculus	tissue	liver		C57BL/6J
SRR6453436	M. musculus	tissue	liver		C57BL/6J

**Conditions**
Sample name	Condition type	Treatment	Start time	End time	Duration
SRR6453429	treatment	light cycle	-1 hr	0 hr	1 hr
	treatment	high fat diet (60% kcal% fat)	-12 wk	0 wk	12 day
SRR6453430	treatment	light cycle	-4 hr	0 hr	4 hr
	treatment	high fat diet (60% kcal% fat)	-12 wk	0 wk	12 day
SRR6453431	treatment	light cycle	-7 hr	0 hr	7 hr
	treatment	high fat diet (60% kcal% fat)	-12 wk	0 wk	12 day
SRR6453432	treatment	light cycle	-10 hr	0 hr	10 hr
	treatment	high fat diet (60% kcal% fat)	-12 wk	0 wk	12 day
SRR6453433	treatment	light cycle	-13 hr	-1 hr	12 hr
	treatment	high fat diet (60% kcal% fat)	-12 wk	0 wk	12 day
SRR6453434	treatment	light cycle	-16 hr	-4 hr	12 hr
	treatment	high fat diet (60% kcal% fat)	-12 wk	0 wk	12 day
SRR6453435	treatment	light cycle	-19 hr	-7 hr	12 hr
	treatment	high fat diet (60% kcal% fat)	-12 wk	0 wk	12 day
SRR6453436	treatment	light cycle	-22 hr	-10 hr	12 hr
	treatment	high fat diet (60% kcal% fat)	-12 wk	0 wk	12 day

**Sample metrics**
Sample name	Raw read length	Trim read depth	Duplication proportion	Proportion reads mapped	Exon/intron ratio	Unique read proportion	Sample QC score	Sample NRO score
SRR6453429	50	98,814,535	0.90688	0.3808	2.82141	0.28985	4	2
SRR6453430	50	160,365,272	0.91231	0.445	2.41085	0.38286	4	2
SRR6453431	50	134,883,850	0.88205	0.3787	2.54789	0.38831	4	2
SRR6453432	50	134,223,305	0.86115	0.4477	2.34656	0.45673	4	2
SRR6453433	50	60,307,619	0.74492	0.2495	2.84942	0.37101	3	2
SRR6453434	50	132,323,329	0.93028	0.4227	2.71225	0.27754	4	2
SRR6453435	50	132,059,187	0.84301	0.3969	2.4355	0.458	4	2
SRR6453436	50	117,355,439	0.81063	0.333	2.9597	0.43343	4	2

**Bidirectionals**
Sample name	Tfit total bidirs	Tfit promoter bidirs	Tfit intronic bidirs	Tfit intergenic bidirs	dREG total bidirs	dREG promoter bidirs	dREG intronic bidirs	dREG intergenic bidirs
SRR6453429	5945	1239	2395	1410	5372	2259	1525	1286
SRR6453430	9765	1985	3753	2863	10977	3706	3108	3537
SRR6453431	8753	2086	3197	2127	9544	3504	2823	2444
SRR6453432	11449	3101	4015	2972	13718	4804	4204	3660
SRR6453433	4380	852	1800	729	3260	1146	1048	743
SRR6453434	6908	1387	2768	1762	5993	2363	1664	1582
SRR6453435	9500	2114	3502	2682	10760	3441	3550	3035
SRR6453436	7926	1779	3077	1840	8713	2878	2871	2194