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SRR497911,SRR497921,SRZ497904,...
| Gene read counts | Bidirectional read counts | Tfit regions | dREG regions |
| ZIP archive | ZIP archive | ZIP archive | ZIP archive |
| For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives. | |||
| Sample name | Sample ID | Paper identifier | Protocol | Library prep | Control/Experimental | Wildtype & Untreated | QC score | Replicate |
| SRR497911 | 919 | Hah2011rapid | GRO-seq | ligation | experimental | False | 4 | 1 |
| SRR497921 | 920 | Hah2011rapid | GRO-seq | ligation | experimental | False | 4 | 1 |
| SRZ497904 | 921 | Hah2011rapid | GRO-seq | ligation | control | True | 4 | 1 |
| SRZ497907 | 922 | Hah2011rapid | GRO-seq | ligation | control | True | 3 | 2 |
| SRZ497912 | 923 | Hah2011rapid | GRO-seq | ligation | experimental | False | 2 | 2 |
| SRZ497914 | 924 | Hah2011rapid | GRO-seq | ligation | experimental | False | 3 | 1 |
| SRZ497917 | 925 | Hah2011rapid | GRO-seq | ligation | experimental | False | 3 | 2 |
| SRZ497922 | 926 | Hah2011rapid | GRO-seq | ligation | experimental | False | 2 | 2 |
| Sample name | Organism | Sample type | Cell type | Clone/Individual | Strain | Genotype | Construct |
| SRR497911 | H. sapiens | cell line | MCF7 | ||||
| SRR497921 | H. sapiens | cell line | MCF7 | ||||
| SRZ497904 | H. sapiens | cell line | MCF7 | ||||
| SRZ497907 | H. sapiens | cell line | MCF7 | ||||
| SRZ497912 | H. sapiens | cell line | MCF7 | ||||
| SRZ497914 | H. sapiens | cell line | MCF7 | ||||
| SRZ497917 | H. sapiens | cell line | MCF7 | ||||
| SRZ497922 | H. sapiens | cell line | MCF7 |
| Sample name | Condition type | Treatment | Start time | End time | Duration |
| SRR497911 | treatment | 17-beta-estradiol (100 nM) | -10 min | 0 min | 10 min |
| SRR497921 | treatment | 17-beta-estradiol (100 nM) | -160 min | 0 min | 160 min |
| SRZ497904 | vehicle | DMSO | None | None | None |
| SRZ497907 | vehicle | DMSO | None | None | None |
| SRZ497912 | treatment | 17-beta-estradiol (100 nM) | -10 min | 0 min | 10 min |
| SRZ497914 | treatment | 17-beta-estradiol (100 nM) | -40 min | 0 min | 40 min |
| SRZ497917 | treatment | 17-beta-estradiol (100 nM) | -40 min | 0 min | 40 min |
| SRZ497922 | treatment | 17-beta-estradiol (100 nM) | -160 min | 0 min | 160 min |
| Sample name | Raw read length | Trim read depth | Duplication proportion | Proportion reads mapped | Exon/intron ratio | Unique read proportion | Sample QC score | Sample NRO score |
| SRR497911 | 44 | 7,266,821 | 0.38653 | 0.7969 | 3.03431 | 0.57967 | 4 | 2 |
| SRR497921 | 44 | 11,719,627 | 0.50213 | 0.6793 | 2.93962 | 0.49019 | 4 | 1 |
| SRZ497904 | 44 | 10,041,858 | 0.44934 | 0.569 | 3.32287 | 0.48176 | 4 | 2 |
| SRZ497907 | 44 | 16,536,277 | 0.44052 | 0.7114 | 2.44467 | 0.60278 | 3 | 2 |
| SRZ497912 | 44 | 21,491,477 | 0.5503 | 0.7291 | 3.23194 | 0.52329 | 2 | 2 |
| SRZ497914 | 44 | 12,521,985 | 0.42791 | 0.7825 | 2.69657 | 0.57826 | 3 | 1 |
| SRZ497917 | 44 | 14,116,209 | 0.45599 | 0.7306 | 2.6066 | 0.55835 | 3 | 1 |
| SRZ497922 | 44 | 20,451,531 | 0.61284 | 0.6093 | 3.08136 | 0.43408 | 2 | 2 |
| Sample name | Tfit total bidirs | Tfit promoter bidirs | Tfit intronic bidirs | Tfit intergenic bidirs | dREG total bidirs | dREG promoter bidirs | dREG intronic bidirs | dREG intergenic bidirs |
| SRR497911 | 16278 | 5222 | 7541 | 2599 | 9035 | 5126 | 2901 | 1249 |
| SRR497921 | 15582 | 5027 | 7401 | 2160 | 8656 | 5347 | 2672 | 969 |
| SRZ497904 | 14934 | 4359 | 6971 | 2551 | 7858 | 4517 | 2435 | 1063 |
| SRZ497907 | 26372 | 5894 | 13690 | 5187 | 14262 | 5797 | 5666 | 2880 |
| SRZ497912 | 27053 | 7548 | 13168 | 4948 | 16333 | 7728 | 6123 | 2725 |
| SRZ497914 | 23178 | 5992 | 11531 | 4387 | 13212 | 5905 | 5110 | 2360 |
| SRZ497917 | 22886 | 5428 | 11650 | 4397 | 12323 | 5481 | 4781 | 2204 |
| SRZ497922 | 19385 | 6107 | 9307 | 2801 | 11010 | 6421 | 3634 | 1274 |
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