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Downloads

Gene read counts	Bidirectional read counts	Tfit regions	dREG regions
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For TDF visualization files please see individual sample downloads or dataset pages for prebuilt archives.

Technical details

Sample name	Sample ID	Paper identifier	Protocol	Library prep	Control/Experimental	QC score	Replicate	Outlier?
SRR1609863	1467	Li2015condensin	GRO-seq	circularization	control	2	1	No
SRR1609864	1468	Li2015condensin	GRO-seq	circularization	experimental	3	1	No
SRR1609865	1469	Li2015condensin	GRO-seq	circularization	experimental	2	1	No
SRR1609866	1470	Li2015condensin	GRO-seq	circularization	experimental	2	1	No
SRR1609867	1471	Li2015condensin	GRO-seq	circularization	control	2	1	No
SRR1609868	1472	Li2015condensin	GRO-seq	circularization	experimental	3	1	No
SRR1609869	1473	Li2015condensin	GRO-seq	circularization	experimental	3	1	No
SRR1609870	1474	Li2015condensin	GRO-seq	circularization	experimental	2	1	No

Cellular details

Sample name	Organism	Sample type	Cell type	Clone/Individual	Strain	Genotype	Construct
SRR1609863	H. sapiens	cell line	MCF7				siRNA control
SRR1609864	H. sapiens	cell line	MCF7				siRNA control
SRR1609865	H. sapiens	cell line	MCF7				siRNA Ncapg
SRR1609866	H. sapiens	cell line	MCF7				siRNA Ncapg
SRR1609867	H. sapiens	cell line	MCF7				siRNA control
SRR1609868	H. sapiens	cell line	MCF7				siRNA control
SRR1609869	H. sapiens	cell line	MCF7				siRNA Ncapd3
SRR1609870	H. sapiens	cell line	MCF7				siRNA Ncapd3

Conditions

Sample name	Condition type	Treatment	Start time	End time	Duration
SRR1609863	vehicle	ethanol	-1 hr	0 hr	1 hr
SRR1609864	treatment	17-beta-estradiol (100 nM)	-1 hr	0 hr	1 hr
SRR1609865	vehicle	ethanol	-1 hr	0 hr	1 hr
SRR1609866	treatment	17-beta-estradiol (100 nM)	-1 hr	0 hr	1 hr
SRR1609867	vehicle	ethanol	-1 hr	0 hr	1 hr
SRR1609868	treatment	17-beta-estradiol (100 nM)	-1 hr	0 hr	1 hr
SRR1609869	vehicle	ethanol	-1 hr	0 hr	1 hr
SRR1609870	treatment	17-beta-estradiol (100 nM)	-1 hr	0 hr	1 hr

Sample metrics

Sample name	Raw read length	Trim read depth	Duplication proportion	Proportion reads mapped	Exon/intron ratio	Unique read proportion	Sample QC score	Sample NRO score
SRR1609863	50	43,348,616	0.55859	0.8991	2.94925	0.4783	2	1
SRR1609864	50	47,887,669	0.66214	0.8717	3.6271	0.38691	3	2
SRR1609865	50	49,153,270	0.50181	0.8619	2.56414	0.55035	2	1
SRR1609866	50	42,074,578	0.58405	0.8546	2.74362	0.44766	2	1
SRR1609867	50	24,258,786	0.64579	0.9081	3.42241	0.37217	2	2
SRR1609868	50	41,101,680	0.67423	0.9072	3.37484	0.35575	3	2
SRR1609869	50	32,759,632	0.77909	0.8963	3.37204	0.24683	3	2
SRR1609870	50	38,843,627	0.62066	0.9142	3.3061	0.41575	2	2

Bidirectionals

Sample name	Tfit total bidirs	Tfit promoter bidirs	Tfit intronic bidirs	Tfit intergenic bidirs	dREG total bidirs	dREG promoter bidirs	dREG intronic bidirs	dREG intergenic bidirs
SRR1609863	25131	10760	9919	4450	19889	8466	7835	3905
SRR1609864	24924	11159	9858	3697	18065	8150	6783	3161
SRR1609865	23643	9268	9778	4652	20448	8062	8388	4235
SRR1609866	20103	8385	8246	3247	15765	7191	6137	2751
SRR1609867	16851	7307	6879	2445	11801	6352	3894	1786
SRR1609868	21364	9031	8562	3458	15891	7290	5990	2687
SRR1609869	15406	7266	6085	1606	10565	6192	3266	1211
SRR1609870	24513	9665	9917	4608	18054	7726	7037	3324