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SRR1542320,SRR1542321,SRR1542322,...
| Gene read counts | Bidirectional read counts | Tfit regions | dREG regions |
| ZIP archive | ZIP archive | ZIP archive | ZIP archive |
| For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives. | |||
| Sample name | Sample ID | Paper identifier | Protocol | Library prep | Control/Experimental | Wildtype & Untreated | QC score | Replicate |
| SRR1542320 | 1611 | Liu2014enhancer | GRO-seq | circularization | control | False | 4 | 1 |
| SRR1542321 | 1612 | Liu2014enhancer | GRO-seq | circularization | experimental | False | 4 | 1 |
| SRR1542322 | 1613 | Liu2014enhancer | GRO-seq | circularization | experimental | False | 4 | 1 |
| SRR1542323 | 1614 | Liu2014enhancer | GRO-seq | circularization | experimental | False | 5 | 1 |
| SRR1542324 | 1615 | Liu2014enhancer | GRO-seq | circularization | control | False | 2 | 1 |
| SRR1542325 | 1616 | Liu2014enhancer | GRO-seq | circularization | experimental | False | 2 | 1 |
| SRR1542326 | 1617 | Liu2014enhancer | GRO-seq | circularization | experimental | False | 3 | 1 |
| SRR1542327 | 1618 | Liu2014enhancer | GRO-seq | circularization | experimental | False | 2 | 1 |
| SRR1542328 | 1619 | Liu2014enhancer | GRO-seq | circularization | experimental | False | 2 | 1 |
| SRR1542329 | 1620 | Liu2014enhancer | GRO-seq | circularization | experimental | False | 2 | 1 |
| SRR1542330 | 1621 | Liu2014enhancer | GRO-seq | circularization | control | False | 2 | 2 |
| SRR1542331 | 1622 | Liu2014enhancer | GRO-seq | circularization | experimental | False | 2 | 2 |
| SRR1542332 | 1623 | Liu2014enhancer | GRO-seq | circularization | experimental | False | 2 | 1 |
| SRR1542333 | 1624 | Liu2014enhancer | GRO-seq | circularization | experimental | False | 2 | 1 |
| Sample name | Organism | Sample type | Cell type | Clone/Individual | Strain | Genotype | Construct |
| SRR1542320 | H. sapiens | cell line | MCF7 | siRNA control | |||
| SRR1542321 | H. sapiens | cell line | MCF7 | siRNA control | |||
| SRR1542322 | H. sapiens | cell line | MCF7 | siRNA Gata3 | |||
| SRR1542323 | H. sapiens | cell line | MCF7 | siRNA Gata3 | |||
| SRR1542324 | H. sapiens | cell line | MCF7 | shRNA control | |||
| SRR1542325 | H. sapiens | cell line | MCF7 | shRNA control | |||
| SRR1542326 | H. sapiens | cell line | MCF7 | shRNA control | |||
| SRR1542327 | H. sapiens | cell line | MCF7 | shRNA RAR-alpha/RAR-gamma | |||
| SRR1542328 | H. sapiens | cell line | MCF7 | shRNA RAR-alpha/RAR-gamma | |||
| SRR1542329 | H. sapiens | cell line | MCF7 | shRNA RAR-alpha/RAR-gamma | |||
| SRR1542330 | H. sapiens | cell line | MCF7 | shRNA control | |||
| SRR1542331 | H. sapiens | cell line | MCF7 | shRNA control | |||
| SRR1542332 | H. sapiens | cell line | MCF7 | shRNA AP2-gamma | |||
| SRR1542333 | H. sapiens | cell line | MCF7 | shRNA AP2-gamma |
| Sample name | Condition type | Treatment | Start time | End time | Duration |
| SRR1542320 | vehicle | ethanol | -1 hr | 0 hr | 1 hr |
| SRR1542321 | treatment | 17-beta-estradiol (100nM) | -1 hr | 0 hr | 1 hr |
| SRR1542322 | vehicle | ethanol | -1 hr | 0 hr | 1 hr |
| SRR1542323 | treatment | 17-beta-estradiol (100nM) | -1 hr | 0 hr | 1 hr |
| SRR1542324 | vehicle | DMSO | -1 hr | 0 hr | 1 hr |
| SRR1542325 | treatment | retinoic acid (1 microM) | -1 hr | 0 hr | 1 hr |
| SRR1542326 | treatment | 17-beta-estradiol (100nM) | -1 hr | 0 hr | 1 hr |
| SRR1542327 | vehicle | DMSO | -1 hr | 0 hr | 1 hr |
| SRR1542328 | treatment | retinoic acid (1 microM) | -1 hr | 0 hr | 1 hr |
| SRR1542329 | treatment | 17-beta-estradiol (100nM) | -1 hr | 0 hr | 1 hr |
| SRR1542330 | vehicle | ethanol | -1 hr | 0 hr | 1 hr |
| SRR1542331 | treatment | 17-beta-estradiol (100nM) | -1 hr | 0 hr | 1 hr |
| SRR1542332 | vehicle | ethanol | -1 hr | 0 hr | 1 hr |
| SRR1542333 | treatment | 17-beta-estradiol (100nM) | -1 hr | 0 hr | 1 hr |
| Sample name | Raw read length | Trim read depth | Duplication proportion | Proportion reads mapped | Exon/intron ratio | Unique read proportion | Sample QC score | Sample NRO score |
| SRR1542320 | 50 | 22,925,084 | 0.89099 | 0.933 | 5.49576 | 0.13914 | 4 | 3 |
| SRR1542321 | 50 | 48,133,914 | 0.90263 | 0.8512 | 5.96247 | 0.15577 | 4 | 3 |
| SRR1542322 | 50 | 42,084,318 | 0.92139 | 0.9418 | 5.67381 | 0.13283 | 4 | 3 |
| SRR1542323 | 50 | 41,267,346 | 0.96108 | 0.895 | 5.73404 | 0.09535 | 5 | 3 |
| SRR1542324 | 50 | 50,112,957 | 0.5935 | 0.9158 | 3.80724 | 0.44764 | 2 | 2 |
| SRR1542325 | 50 | 43,965,044 | 0.58384 | 0.9124 | 3.51527 | 0.45871 | 2 | 2 |
| SRR1542326 | 50 | 37,221,848 | 0.67296 | 0.8935 | 4.1072 | 0.3598 | 3 | 2 |
| SRR1542327 | 50 | 48,746,619 | 0.57287 | 0.8987 | 3.52294 | 0.46709 | 2 | 2 |
| SRR1542328 | 50 | 22,855,043 | 0.5763 | 0.8958 | 3.64536 | 0.44127 | 2 | 2 |
| SRR1542329 | 50 | 41,978,228 | 0.58996 | 0.9034 | 3.7343 | 0.4416 | 2 | 2 |
| SRR1542330 | 50 | 47,314,164 | 0.55961 | 0.9488 | 3.87193 | 0.47778 | 2 | 2 |
| SRR1542331 | 50 | 45,813,970 | 0.54662 | 0.949 | 3.6 | 0.4907 | 2 | 2 |
| SRR1542332 | 50 | 44,099,352 | 0.54542 | 0.9473 | 2.82171 | 0.49316 | 2 | 1 |
| SRR1542333 | 50 | 46,237,797 | 0.52439 | 0.9552 | 3.27504 | 0.51291 | 2 | 2 |
| Sample name | Tfit total bidirs | Tfit promoter bidirs | Tfit intronic bidirs | Tfit intergenic bidirs | dREG total bidirs | dREG promoter bidirs | dREG intronic bidirs | dREG intergenic bidirs |
| SRR1542320 | 10088 | 5223 | 3505 | 672 | 6944 | 4745 | 1781 | 577 |
| SRR1542321 | 16468 | 8300 | 6160 | 1258 | 11779 | 6719 | 3531 | 1113 |
| SRR1542322 | 12622 | 6349 | 4658 | 878 | 9602 | 6194 | 2645 | 884 |
| SRR1542323 | 5570 | 2865 | 1820 | 312 | 4176 | 2753 | 1032 | 399 |
| SRR1542324 | 24506 | 11828 | 9489 | 3660 | 20597 | 8651 | 8390 | 3530 |
| SRR1542325 | 24463 | 11620 | 9396 | 3813 | 19961 | 8587 | 8158 | 3389 |
| SRR1542326 | 18727 | 9697 | 7031 | 2015 | 14085 | 7457 | 4783 | 1839 |
| SRR1542327 | 25300 | 11778 | 9845 | 3932 | 20736 | 8594 | 8565 | 3668 |
| SRR1542328 | 18271 | 8704 | 7343 | 2279 | 13949 | 7641 | 4877 | 1827 |
| SRR1542329 | 23772 | 11461 | 9380 | 3426 | 20210 | 9003 | 8131 | 3287 |
| SRR1542330 | 25368 | 12216 | 9534 | 3982 | 20827 | 8659 | 8309 | 3802 |
| SRR1542331 | 23572 | 10944 | 9037 | 3717 | 19955 | 8545 | 8085 | 3390 |
| SRR1542332 | 24931 | 10523 | 10066 | 4160 | 18960 | 8056 | 7565 | 3460 |
| SRR1542333 | 25439 | 10157 | 10047 | 4766 | 19241 | 7800 | 7744 | 3725 |
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