DBNascent | Samples

SRR7300121,SRR7300122,SRR7300123,...

**Downloads**
Gene read counts	Bidirectional read counts	Tfit regions	dREG regions
ZIP archive	ZIP archive	ZIP archive	ZIP archive
For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives.

**Technical details**
Sample name	Sample ID	Paper identifier	Protocol	Library prep	Control/Experimental	Wildtype & Untreated	QC score	Replicate
SRR7300121	1717	Lloret-llinares2018rna	PRO-seq	ligation	control	False	1	1
SRR7300122	1718	Lloret-llinares2018rna	PRO-seq	ligation	control	False	1	2
SRR7300123	1719	Lloret-llinares2018rna	PRO-seq	ligation	experimental	False	1	1
SRR7300124	1720	Lloret-llinares2018rna	PRO-seq	ligation	experimental	False	1	2
SRR7300125	1721	Lloret-llinares2018rna	PRO-seq	ligation	experimental	False	1	1
SRR7300126	1722	Lloret-llinares2018rna	PRO-seq	ligation	experimental	False	1	2
SRR7300127	1723	Lloret-llinares2018rna	PRO-seq	ligation	experimental	False	1	1
SRR7300128	1724	Lloret-llinares2018rna	PRO-seq	ligation	experimental	False	1	2
SRR7638782	1725	Lloret-llinares2018rna	PRO-seq	ligation	control	False	2	1
SRR7638783	1726	Lloret-llinares2018rna	PRO-seq	ligation	control	False	1	2
SRR7638784	1727	Lloret-llinares2018rna	PRO-seq	ligation	experimental	False	1	1
SRR7638785	1728	Lloret-llinares2018rna	PRO-seq	ligation	experimental	False	1	2

**Cellular details**
Sample name	Organism	Sample type	Cell type	Clone/Individual	Strain	Genotype	Construct
SRR7300121	M. musculus	cell line	ESC	E14		shRNA control (stable)
SRR7300122	M. musculus	cell line	ESC	E14		shRNA control (stable)
SRR7300123	M. musculus	cell line	ESC	E14		shRNA control (stable)
SRR7300124	M. musculus	cell line	ESC	E14		shRNA control (stable)
SRR7300125	M. musculus	cell line	ESC	E14		shRNA Rrp40 (stable)
SRR7300126	M. musculus	cell line	ESC	E14		shRNA Rrp40 (stable)
SRR7300127	M. musculus	cell line	ESC	E14		shRNA Rrp40 (stable)
SRR7300128	M. musculus	cell line	ESC	E14		shRNA Rrp40 (stable)
SRR7638782	M. musculus	cell line	ESC	E14			shRNA Rbm7
SRR7638783	M. musculus	cell line	ESC	E14			shRNA Rbm7
SRR7638784	M. musculus	cell line	ESC	E14			shRNA Rbm7
SRR7638785	M. musculus	cell line	ESC	E14			shRNA Rbm7

**Conditions**
Sample name	Condition type	Treatment	Start time	End time	Duration
SRR7300121	no treatment		None	None	None
SRR7300122	no treatment		None	None	None
SRR7300123	treatment	embryoid body differentiation protocol	-3 day	0 day	3 day
SRR7300124	treatment	embryoid body differentiation protocol	-3 day	0 day	3 day
SRR7300125	no treatment		None	None	None
SRR7300126	no treatment		None	None	None
SRR7300127	treatment	embryoid body differentiation protocol	-3 day	0 day	3 day
SRR7300128	treatment	embryoid body differentiation protocol	-3 day	0 day	3 day
SRR7638782	no treatment		None	None	None
SRR7638783	no treatment		None	None	None
SRR7638784	treatment	embryoid body differentiation protocol	-3 day	0 day	3 day
SRR7638785	treatment	embryoid body differentiation protocol	-3 day	0 day	3 day

**Sample metrics**
Sample name	Raw read length	Trim read depth	Duplication proportion	Proportion reads mapped	Exon/intron ratio	Unique read proportion	Sample QC score	Sample NRO score
SRR7300121	76	28,533,235	0.44121	0.7402	7.84605	0.5981	1	4
SRR7300122	76	29,784,796	0.30008	0.7543	4.27019	0.77884	1	2
SRR7300123	76	21,321,882	0.39008	0.7654	10.6416	0.62701	1	5
SRR7300124	76	35,163,624	0.35764	0.6874	4.5349	0.74062	1	2
SRR7300125	76	34,550,572	0.27148	0.7203	4.3966	0.81338	1	2
SRR7300126	76	30,901,767	0.32214	0.6813	4.82314	0.76912	1	2
SRR7300127	76	38,362,116	0.35228	0.6977	4.42071	0.76448	1	2
SRR7300128	76	37,682,794	0.44298	0.7418	4.21694	0.74095	1	2
SRR7638782	76	49,185,350	0.52846	0.6774	5.42118	0.52885	2	3
SRR7638783	76	35,457,920	0.34368	0.7168	4.06545	0.75249	1	2
SRR7638784	76	31,340,576	0.37367	0.747	8.54393	0.66919	1	4
SRR7638785	76	27,440,572	0.34701	0.7125	4.24283	0.73759	1	2

**Bidirectionals**
Sample name	Tfit total bidirs	Tfit promoter bidirs	Tfit intronic bidirs	Tfit intergenic bidirs	dREG total bidirs	dREG promoter bidirs	dREG intronic bidirs	dREG intergenic bidirs
SRR7300121	25886	7603	9386	6534	21647	7032	7236	5669
SRR7300122	34206	9354	11836	9853	25326	5523	8435	8562
SRR7300123	19570	5956	7239	4091	13005	5407	3955	2751
SRR7300124	30406	10241	10454	6667	23525	6056	7381	6914
SRR7300125	35992	9345	12790	10616	28058	5752	9580	9754
SRR7300126	36509	8938	13537	10430	27391	5225	9230	9612
SRR7300127	31727	10286	11094	7290	24861	6183	8051	7479
SRR7300128	25374	8315	9192	4950	20568	5691	6589	5488
SRR7638782	25622	7100	9197	6862	21627	5997	7130	6681
SRR7638783	41977	9698	14443	14250	30298	6259	9513	11679
SRR7638784	26003	7120	9618	6421	17180	5931	5599	4287
SRR7638785	24422	7784	8493	5298	19413	6336	5915	4913