DBNascent | Samples

SRR1015583,SRR1015584,SRR1015585,...

**Downloads**
Gene read counts	Bidirectional read counts	Tfit regions	dREG regions
ZIP archive	ZIP archive	ZIP archive	ZIP archive
For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives.

**Technical details**
Sample name	Sample ID	Paper identifier	Protocol	Library prep	Control/Experimental	Wildtype & Untreated	QC score	Replicate
SRR1015583	1748	Luo2014dynamic	GRO-seq	ligation	control	True	1	1
SRR1015584	1749	Luo2014dynamic	GRO-seq	ligation	control	True	1	2
SRR1015585	1750	Luo2014dynamic	GRO-seq	ligation	experimental	False	1	1
SRR1015586	1751	Luo2014dynamic	GRO-seq	ligation	experimental	False	2	2
SRR1015587	1752	Luo2014dynamic	GRO-seq	ligation	experimental	False	2	1
SRR1015588	1753	Luo2014dynamic	GRO-seq	ligation	experimental	False	1	2
SRR1015589	1754	Luo2014dynamic	GRO-seq	ligation	experimental	False	2	1
SRR1015590	1755	Luo2014dynamic	GRO-seq	ligation	experimental	False	1	2
SRR1015591	1756	Luo2014dynamic	GRO-seq	ligation	control	True	1	1
SRR1015592	1757	Luo2014dynamic	GRO-seq	ligation	control	True	1	2
SRR1015593	1758	Luo2014dynamic	GRO-seq	ligation	experimental	False	3	1
SRR1015594	1759	Luo2014dynamic	GRO-seq	ligation	experimental	False	4	2

**Cellular details**
Sample name	Organism	Sample type	Cell type	Clone/Individual	Strain	Genotype	Construct
SRR1015583	H. sapiens	cell line	AC16
SRR1015584	H. sapiens	cell line	AC16
SRR1015585	H. sapiens	cell line	AC16
SRR1015586	H. sapiens	cell line	AC16
SRR1015587	H. sapiens	cell line	AC16
SRR1015588	H. sapiens	cell line	AC16
SRR1015589	H. sapiens	cell line	AC16
SRR1015590	H. sapiens	cell line	AC16
SRR1015591	H. sapiens	cell line	AC16
SRR1015592	H. sapiens	cell line	AC16
SRR1015593	H. sapiens	cell line	AC16
SRR1015594	H. sapiens	cell line	AC16

**Conditions**
Sample name	Condition type	Treatment	Start time	End time	Duration
SRR1015583	no treatment		None	None	None
SRR1015584	no treatment		None	None	None
SRR1015585	treatment	TNF-alpha (25 ng/mL)	-10 min	0 min	10 min
SRR1015586	treatment	TNF-alpha (25 ng/mL)	-10 min	0 min	10 min
SRR1015587	treatment	TNF-alpha (25 ng/mL)	-30 min	0 min	30 min
SRR1015588	treatment	TNF-alpha (25 ng/mL)	-30 min	0 min	30 min
SRR1015589	treatment	TNF-alpha (25 ng/mL)	-2 hr	0 hr	2 hr
SRR1015590	treatment	TNF-alpha (25 ng/mL)	-2 hr	0 hr	2 hr
SRR1015591	vehicle	DMSO	-15 min	0 min	15 min
SRR1015592	vehicle	DMSO	-15 min	0 min	15 min
SRR1015593	no treatment		None	None	None
SRR1015594	no treatment		None	None	None

**Sample metrics**
Sample name	Raw read length	Trim read depth	Duplication proportion	Proportion reads mapped	Exon/intron ratio	Unique read proportion	Sample QC score	Sample NRO score
SRR1015583	43	21,543,740	0.29858	0.8315	2.45627	0.74182	1	1
SRR1015584	43	23,182,200	0.29563	0.867	2.07443	0.76211	1	1
SRR1015585	38	21,095,684	0.33488	0.8221	2.89621	0.70565	1	1
SRR1015586	38	17,926,564	0.36844	0.8586	2.70813	0.68265	2	1
SRR1015587	38	15,902,227	0.33406	0.8235	2.45397	0.69061	2	1
SRR1015588	43	21,457,631	0.28897	0.8718	1.78175	0.76103	1	1
SRR1015589	38	19,911,846	0.31218	0.8448	2.28943	0.73859	2	1
SRR1015590	38	23,741,209	0.33941	0.8158	2.35807	0.7219	1	1
SRR1015591	51	76,671,037	0.40172	0.8142	3.02834	0.72518	1	2
SRR1015592	51	54,654,868	0.37924	0.8249	3.05108	0.72506	1	2
SRR1015593	51	129,665,819	0.7992	0.8304	1.7294	0.27885	3	1
SRR1015594	51	153,544,155	0.86384	0.8547	1.5369	0.2072	4	1

**Bidirectionals**
Sample name	Tfit total bidirs	Tfit promoter bidirs	Tfit intronic bidirs	Tfit intergenic bidirs	dREG total bidirs	dREG promoter bidirs	dREG intronic bidirs	dREG intergenic bidirs
SRR1015583	40833	15479	16725	8804	25927	9387	10697	5964
SRR1015584	45319	12366	21561	10149	26691	8499	11282	6727
SRR1015585	39695	14246	16697	9068	26312	9232	11115	6019
SRR1015586	36945	9085	19200	7081	19470	7195	8199	3864
SRR1015587	32779	11236	14593	7113	20620	7713	8709	4254
SRR1015588	39950	9996	19848	9239	23463	6932	10801	5671
SRR1015589	38484	13095	16602	8661	24541	8574	10478	5396
SRR1015590	41388	12925	19184	8350	24363	8280	10441	5433
SRR1015591	57765	18267	21606	17498	46120	10453	20998	13734
SRR1015592	56608	18359	22138	15311	39285	9793	17144	11316
SRR1015593	39018	14036	15648	8667	27155	9255	11052	6740
SRR1015594	41096	14077	17613	8108	24615	8719	9665	5946