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Gene read counts	Bidirectional read counts	Tfit regions	dREG regions
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For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives.

Technical details

Sample name	Sample ID	Paper identifier	Protocol	Library prep	Control/Experimental	Wildtype & Untreated	QC score	Replicate
SRR2144178	1777	Mahat2016mammalian	PRO-seq	ligation	control	True	2	1
SRR2144179	1778	Mahat2016mammalian	PRO-seq	ligation	control	True	2	2
SRR2144180	1779	Mahat2016mammalian	PRO-seq	ligation	experimental	False	1	1
SRR2144181	1780	Mahat2016mammalian	PRO-seq	ligation	experimental	False	2	2
SRR2144182	1781	Mahat2016mammalian	PRO-seq	ligation	experimental	False	2	1
SRR2144183	1782	Mahat2016mammalian	PRO-seq	ligation	experimental	False	2	2
SRR2144184	1783	Mahat2016mammalian	PRO-seq	ligation	experimental	False	2	1
SRR2144185	1784	Mahat2016mammalian	PRO-seq	ligation	experimental	False	4	2
SRR2144186	1785	Mahat2016mammalian	PRO-seq	ligation	experimental	False	1	1
SRR2144187	1786	Mahat2016mammalian	PRO-seq	ligation	experimental	False	1	2
SRR2144188	1787	Mahat2016mammalian	PRO-seq	ligation	experimental	False	3	1
SRR2144189	1788	Mahat2016mammalian	PRO-seq	ligation	experimental	False	4	2
SRR2144190	1789	Mahat2016mammalian	PRO-seq	ligation	experimental	False	1	1
SRR2144191	1790	Mahat2016mammalian	PRO-seq	ligation	experimental	False	1	2
SRR2144192	1791	Mahat2016mammalian	PRO-seq	ligation	experimental	False	2	1
SRR2144193	1792	Mahat2016mammalian	PRO-seq	ligation	experimental	False	1	2
SRR2144194	1793	Mahat2016mammalian	PRO-seq	ligation	experimental	False	1	1
SRR2144195	1794	Mahat2016mammalian	PRO-seq	ligation	experimental	False	1	2
SRR2144196	1795	Mahat2016mammalian	PRO-seq	ligation	experimental	False	1	1
SRR2144197	1796	Mahat2016mammalian	PRO-seq	ligation	experimental	False	1	2
SRR2144198	1797	Mahat2016mammalian	PRO-seq	ligation	experimental	False	1	1
SRR2144199	1798	Mahat2016mammalian	PRO-seq	ligation	experimental	False	1	2
SRR2144200	1799	Mahat2016mammalian	PRO-seq	ligation	experimental	False	1	1
SRR2144201	1800	Mahat2016mammalian	PRO-seq	ligation	experimental	False	1	2

Cellular details

Sample name	Organism	Sample type	Cell type	Clone/Individual	Strain	Genotype	Construct
SRR2144178	M. musculus	cell line	MEF
SRR2144179	M. musculus	cell line	MEF
SRR2144180	M. musculus	cell line	MEF
SRR2144181	M. musculus	cell line	MEF
SRR2144182	M. musculus	cell line	MEF
SRR2144183	M. musculus	cell line	MEF
SRR2144184	M. musculus	cell line	MEF
SRR2144185	M. musculus	cell line	MEF
SRR2144186	M. musculus	cell line	MEF			Hsf1 -/-
SRR2144187	M. musculus	cell line	MEF			Hsf1 -/-
SRR2144188	M. musculus	cell line	MEF			Hsf1 -/-
SRR2144189	M. musculus	cell line	MEF			Hsf1 -/-
SRR2144190	M. musculus	cell line	MEF			Hsf1 -/-
SRR2144191	M. musculus	cell line	MEF			Hsf1 -/-
SRR2144192	M. musculus	cell line	MEF			Hsf1 -/-
SRR2144193	M. musculus	cell line	MEF			Hsf1 -/-
SRR2144194	M. musculus	cell line	MEF			Hsf1 -/-; Hsf2 -/-
SRR2144195	M. musculus	cell line	MEF			Hsf1 -/-; Hsf2 -/-
SRR2144196	M. musculus	cell line	MEF			Hsf1 -/-; Hsf2 -/-
SRR2144197	M. musculus	cell line	MEF			Hsf1 -/-; Hsf2 -/-
SRR2144198	M. musculus	cell line	MEF			Hsf1 -/-; Hsf2 -/-
SRR2144199	M. musculus	cell line	MEF			Hsf1 -/-; Hsf2 -/-
SRR2144200	M. musculus	cell line	MEF			Hsf1 -/-; Hsf2 -/-
SRR2144201	M. musculus	cell line	MEF			Hsf1 -/-; Hsf2 -/-

Conditions

Sample name	Condition type	Treatment	Start time	End time	Duration
SRR2144178	no treatment		None	None	None
SRR2144179	no treatment		None	None	None
SRR2144180	treatment	heat shock (42 Celsius)	-150 s	0 s	150 s
SRR2144181	treatment	heat shock (42 Celsius)	-150 s	0 s	150 s
SRR2144182	treatment	heat shock (42 Celsius)	-12 min	0 min	12 min
SRR2144183	treatment	heat shock (42 Celsius)	-12 min	0 min	12 min
SRR2144184	treatment	heat shock (42 Celsius)	-60 min	0 min	1 hr
SRR2144185	treatment	heat shock (42 Celsius)	-60 min	0 min	1 hr
SRR2144186	no treatment		None	None	None
SRR2144187	no treatment		None	None	None
SRR2144188	treatment	heat shock (42 Celsius)	-150 s	0 s	150 s
SRR2144189	treatment	heat shock (42 Celsius)	-150 s	0 s	150 s
SRR2144190	treatment	heat shock (42 Celsius)	-12 min	0 min	12 min
SRR2144191	treatment	heat shock (42 Celsius)	-12 min	0 min	12 min
SRR2144192	treatment	heat shock (42 Celsius)	-60 min	0 min	1 hr
SRR2144193	treatment	heat shock (42 Celsius)	-60 min	0 min	1 hr
SRR2144194	no treatment		None	None	None
SRR2144195	no treatment		None	None	None
SRR2144196	treatment	heat shock (42 Celsius)	-150 s	0 s	150 s
SRR2144197	treatment	heat shock (42 Celsius)	-150 s	0 s	150 s
SRR2144198	treatment	heat shock (42 Celsius)	-12 min	0 min	12 min
SRR2144199	treatment	heat shock (42 Celsius)	-12 min	0 min	12 min
SRR2144200	treatment	heat shock (42 Celsius)	-60 min	0 min	1 hr
SRR2144201	treatment	heat shock (42 Celsius)	-60 min	0 min	1 hr

Sample metrics

Sample name	Raw read length	Trim read depth	Duplication proportion	Proportion reads mapped	Exon/intron ratio	Unique read proportion	Sample QC score	Sample NRO score
SRR2144178	32	44,578,186	0.51708	0.5349	3.73088	0.58805	2	2
SRR2144179	32	28,102,230	0.4966	0.5607	3.41538	0.56723	2	2
SRR2144180	32	31,758,110	0.48271	0.5994	4.16798	0.58388	1	2
SRR2144181	32	27,101,514	0.49388	0.5687	4.19836	0.5589	2	2
SRR2144182	35	50,821,238	0.60137	0.587	3.97749	0.49832	2	2
SRR2144183	32	36,409,367	0.55952	0.6499	3.66219	0.51075	2	2
SRR2144184	35	48,868,612	0.62659	0.5872	3.73762	0.52344	2	2
SRR2144185	32	7,180,363	0.45936	0.6325	3.3981	0.42688	4	2
SRR2144186	32	57,563,699	0.43159	0.6996	3.22064	0.70072	1	2
SRR2144187	32	52,298,081	0.44256	0.7046	3.4525	0.66995	1	2
SRR2144188	51	12,049,865	0.46388	0.6951	3.70977	0.51895	3	2
SRR2144189	51	9,706,395	0.42193	0.7237	3.84746	0.54234	4	2
SRR2144190	32	31,941,036	0.42025	0.7193	3.65027	0.62935	1	2
SRR2144191	32	46,514,680	0.45081	0.7086	3.61127	0.64204	1	2
SRR2144192	32	16,635,127	0.36601	0.756	3.7655	0.64804	2	2
SRR2144193	32	34,246,998	0.42754	0.7358	3.91467	0.65602	1	2
SRR2144194	32	37,212,939	0.4253	0.7089	3.73363	0.65211	1	2
SRR2144195	32	45,533,800	0.40945	0.7243	3.37976	0.68512	1	2
SRR2144196	51	23,851,571	0.45977	0.7155	4.09444	0.59334	1	2
SRR2144197	51	25,168,214	0.43614	0.7533	3.97011	0.61225	1	2
SRR2144198	32	45,272,238	0.45061	0.7145	3.32675	0.63793	1	2
SRR2144199	32	68,750,588	0.48445	0.7201	3.45557	0.62332	1	2
SRR2144200	32	64,648,445	0.45183	0.7246	4.26568	0.67659	1	2
SRR2144201	32	33,241,405	0.36686	0.7328	3.67617	0.71333	1	2

Bidirectionals

Sample name	Tfit total bidirs	Tfit promoter bidirs	Tfit intronic bidirs	Tfit intergenic bidirs	dREG total bidirs	dREG promoter bidirs	dREG intronic bidirs	dREG intergenic bidirs
SRR2144178	29094	10470	10129	6153	19421	6865	6608	4079
SRR2144179	24372	8473	8893	4536	15214	6525	4671	2649
SRR2144180	25746	11454	8087	4223	17191	6859	5422	3084
SRR2144181	23722	10699	7565	3494	15441	6829	4537	2442
SRR2144182	24648	10741	7932	3607	17548	6979	5582	3094
SRR2144183	22814	9545	7896	3264	15939	6851	4958	2524
SRR2144184	34070	9680	13222	8179	25294	7370	9582	5953
SRR2144185	13684	4949	5064	2134	9079	4906	2411	1012
SRR2144186	37256	13177	11282	10509	29423	6552	11565	8719
SRR2144187	37669	13192	11909	10350	28962	6628	11250	8467
SRR2144188	20503	7644	7475	3168	12049	5953	3249	1623
SRR2144189	19394	7366	6995	2978	11743	5931	3192	1540
SRR2144190	29457	11982	9378	6114	21905	6844	7853	5088
SRR2144191	31479	12755	9729	6953	24615	6707	9327	6237
SRR2144192	33855	10663	12756	8398	26678	7480	10490	6584
SRR2144193	39895	12304	14222	11033	33273	7121	13821	9500
SRR2144194	30488	12509	9384	6449	21696	6696	7820	5025
SRR2144195	31371	12633	9459	7105	23398	6614	8734	5805
SRR2144196	25366	10750	8451	3949	16697	6707	5323	2878
SRR2144197	26498	11122	8987	4379	17885	6755	5943	3321
SRR2144198	26440	12953	7590	4125	20813	6897	7557	4315
SRR2144199	28694	13905	7938	4959	24445	6689	9389	5853
SRR2144200	37460	13699	11439	9829	34200	5852	15034	9621
SRR2144201	34645	12708	11336	8279	27519	6410	11573	6694