Explore DBNascent | browse or search sample metadata

Downloads

Gene read counts	Bidirectional read counts	Tfit regions	dREG regions
ZIP archive	ZIP archive	ZIP archive	ZIP archive
For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives.

Technical details

Sample name	Sample ID	Paper identifier	Protocol	Library prep	Control/Experimental	Wildtype & Untreated	QC score	Replicate
SRR5084317	2214	Schaukowitch2017intrinsic	GRO-seq	circularization	control	True	3	1
SRR5084318	2215	Schaukowitch2017intrinsic	GRO-seq	circularization	experimental	False	3	1
SRR5084319	2216	Schaukowitch2017intrinsic	GRO-seq	circularization	experimental	False	3	1
SRR5084320	2217	Schaukowitch2017intrinsic	GRO-seq	circularization	experimental	False	3	1
SRR5084321	2218	Schaukowitch2017intrinsic	GRO-seq	circularization	control	True	2	2
SRR5084322	2219	Schaukowitch2017intrinsic	GRO-seq	circularization	experimental	False	2	2
SRR5084323	2220	Schaukowitch2017intrinsic	GRO-seq	circularization	experimental	False	3	2
SRR5084324	2221	Schaukowitch2017intrinsic	GRO-seq	circularization	experimental	False	3	2

Cellular details

Sample name	Organism	Sample type	Cell type	Clone/Individual	Strain	Genotype	Construct
SRR5084317	M. musculus	primary cell	cortical neuron
SRR5084318	M. musculus	primary cell	cortical neuron
SRR5084319	M. musculus	primary cell	cortical neuron
SRR5084320	M. musculus	primary cell	cortical neuron
SRR5084321	M. musculus	primary cell	cortical neuron
SRR5084322	M. musculus	primary cell	cortical neuron
SRR5084323	M. musculus	primary cell	cortical neuron
SRR5084324	M. musculus	primary cell	cortical neuron

Conditions

Sample name	Condition type	Treatment	Start time	End time	Duration
SRR5084317	no treatment		None	None	None
SRR5084318	treatment	tetrodotoxin	-30 min	0 min	30 min
SRR5084319	treatment	tetrodotoxin	-2 hr	0 hr	2 hr
SRR5084320	treatment	tetrodotoxin	-4 hr	0 hr	4 hr
SRR5084321	no treatment		None	None	None
SRR5084322	treatment	tetrodotoxin	-30 min	0 min	30 min
SRR5084323	treatment	tetrodotoxin	-2 hr	0 hr	2 hr
SRR5084324	treatment	tetrodotoxin	-4 hr	0 hr	4 hr

Sample metrics

Sample name	Raw read length	Trim read depth	Duplication proportion	Proportion reads mapped	Exon/intron ratio	Unique read proportion	Sample QC score	Sample NRO score
SRR5084317	51	12,882,369	0.73477	0.7557	3.60366	0.26537	3	2
SRR5084318	51	10,889,581	0.78	0.761	2.63968	0.21307	3	1
SRR5084319	51	20,396,742	0.7809	0.7545	2.90126	0.24549	3	1
SRR5084320	51	14,837,832	0.79054	0.7437	3.09295	0.21273	3	2
SRR5084321	51	19,376,778	0.58249	0.8348	1.77522	0.53059	2	1
SRR5084322	51	20,847,713	0.64759	0.8152	1.60901	0.48249	2	1
SRR5084323	51	23,985,913	0.69774	0.8151	1.76399	0.4601	3	1
SRR5084324	51	25,490,525	0.67318	0.8254	1.65972	0.50332	3	1

Bidirectionals

Sample name	Tfit total bidirs	Tfit promoter bidirs	Tfit intronic bidirs	Tfit intergenic bidirs	dREG total bidirs	dREG promoter bidirs	dREG intronic bidirs	dREG intergenic bidirs
SRR5084317	2469	683	786	48	1336	490	368	266
SRR5084318	1497	400	484	31	830	250	252	143
SRR5084319	3527	817	1346	110	2033	609	640	323
SRR5084320	2404	629	773	79	1352	446	384	225
SRR5084321	14320	4794	5557	1464	10612	4851	3004	1345
SRR5084322	13275	3816	5545	1461	9587	4111	2803	1277
SRR5084323	14098	4345	5581	1539	9839	4279	2828	1329
SRR5084324	17432	5478	7074	2142	12650	5547	3648	1760