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SRR5085734,SRR5085735,SRR5085736,...
| Gene read counts | Bidirectional read counts | Tfit regions | dREG regions |
| ZIP archive | ZIP archive | ZIP archive | ZIP archive |
| For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives. | |||
| Sample name | Sample ID | Paper identifier | Protocol | Library prep | Control/Experimental | Wildtype & Untreated | QC score | Replicate |
| SRR5085734 | 2667 | Williamson2017uv | GRO-seq | ligation | control | False | 1 | 1 |
| SRR5085735 | 2668 | Williamson2017uv | GRO-seq | ligation | control | False | 1 | 1 |
| SRR5085736 | 2669 | Williamson2017uv | GRO-seq | ligation | control | False | 1 | 1 |
| SRR5085737 | 2670 | Williamson2017uv | GRO-seq | ligation | experimental | False | 1 | 1 |
| SRR5085738 | 2671 | Williamson2017uv | GRO-seq | ligation | experimental | False | 1 | 1 |
| SRR5085739 | 2672 | Williamson2017uv | GRO-seq | ligation | experimental | False | 1 | 1 |
| SRR5085894 | 2673 | Williamson2017uv | GRO-seq | ligation | control | True | 1 | 1 |
| SRR5085895 | 2674 | Williamson2017uv | GRO-seq | ligation | experimental | False | 1 | 1 |
| SRR5085896 | 2675 | Williamson2017uv | GRO-seq | ligation | experimental | False | 1 | 1 |
| SRR5085897 | 2676 | Williamson2017uv | GRO-seq | ligation | experimental | False | 1 | 1 |
| SRR5085898 | 2677 | Williamson2017uv | GRO-seq | ligation | experimental | False | 1 | 1 |
| SRR5085899 | 2678 | Williamson2017uv | GRO-seq | ligation | experimental | False | 1 | 1 |
| SRR5085900 | 2679 | Williamson2017uv | GRO-seq | ligation | experimental | False | 1 | 1 |
| Sample name | Organism | Sample type | Cell type | Clone/Individual | Strain | Genotype | Construct |
| SRR5085734 | H. sapiens | cell line | MRC5VA | ||||
| SRR5085735 | H. sapiens | cell line | MRC5VA | ||||
| SRR5085736 | H. sapiens | cell line | MRC5VA | ||||
| SRR5085737 | H. sapiens | cell line | MRC5VA | ||||
| SRR5085738 | H. sapiens | cell line | MRC5VA | ||||
| SRR5085739 | H. sapiens | cell line | MRC5VA | ||||
| SRR5085894 | H. sapiens | cell line | MRC5VA | ||||
| SRR5085895 | H. sapiens | cell line | MRC5VA | ||||
| SRR5085896 | H. sapiens | cell line | MRC5VA | ||||
| SRR5085897 | H. sapiens | cell line | MRC5VA | ||||
| SRR5085898 | H. sapiens | cell line | MRC5VA | ||||
| SRR5085899 | H. sapiens | cell line | MRC5VA | ||||
| SRR5085900 | H. sapiens | cell line | MRC5VA |
| Sample name | Condition type | Treatment | Start time | End time | Duration |
| SRR5085734 | treatment | DRB (100 microM) | -220 min | -10 min | 210 min |
| SRR5085735 | treatment | DRB (100 microM) | -235 min | -25 min | 210 min |
| SRR5085736 | treatment | DRB (100 microM) | -250 min | -40 min | 210 min |
| SRR5085737 | treatment | DRB (100 microM) | -220 min | -10 min | 210 min |
| treatment | ultraviolet C (15 J/m^2) | -601 s | -600 s | 1 s | |
| SRR5085738 | treatment | DRB (100 microM) | -235 min | -25 min | 210 min |
| treatment | ultraviolet C (15 J/m^2) | -1501 s | -1500 s | 1 s | |
| SRR5085739 | treatment | DRB (100 microM) | -250 min | -40 min | 210 min |
| treatment | ultraviolet C (15 J/m^2) | -2401 s | -2400 s | 1 s | |
| SRR5085894 | no treatment | None | None | None | |
| SRR5085895 | treatment | ultraviolet C (15 J/m^2) | -7201 s | -7200 s | 1 s |
| SRR5085896 | treatment | ultraviolet C (15 J/m^2) | -18001 s | -18000 s | 1 s |
| SRR5085897 | treatment | ultraviolet C (15 J/m^2) | -28801 s | -28800 s | 1 s |
| SRR5085898 | treatment | ultraviolet C (15 J/m^2) | -36001 s | -36000 s | 1 s |
| SRR5085899 | treatment | ultraviolet C (15 J/m^2) | -43201 s | -43200 s | 1 s |
| SRR5085900 | treatment | ultraviolet C (15 J/m^2) | -86401 s | -86400 s | 1 s |
| Sample name | Raw read length | Trim read depth | Duplication proportion | Proportion reads mapped | Exon/intron ratio | Unique read proportion | Sample QC score | Sample NRO score |
| SRR5085734 | 51 | 45,624,009 | 0.3363 | 0.8952 | 6.57996 | 0.80634 | 1 | 3 |
| SRR5085735 | 51 | 48,705,269 | 0.31332 | 0.904 | 5.17959 | 0.83522 | 1 | 3 |
| SRR5085736 | 51 | 72,540,010 | 0.33829 | 0.9078 | 4.35525 | 0.8533 | 1 | 2 |
| SRR5085737 | 51 | 56,073,375 | 0.37113 | 0.8961 | 8.32506 | 0.79155 | 1 | 4 |
| SRR5085738 | 51 | 55,151,115 | 0.36474 | 0.8993 | 8.24694 | 0.7875 | 1 | 4 |
| SRR5085739 | 51 | 57,355,943 | 0.37268 | 0.9009 | 7.71813 | 0.79114 | 1 | 4 |
| SRR5085894 | 101 | 41,262,328 | 0.27802 | 0.9446 | 4.68514 | 0.81341 | 1 | 2 |
| SRR5085895 | 101 | 48,036,476 | 0.44629 | 0.9216 | 7.67837 | 0.64333 | 1 | 4 |
| SRR5085896 | 101 | 43,348,522 | 0.41601 | 0.9332 | 5.93522 | 0.67006 | 1 | 3 |
| SRR5085897 | 101 | 36,823,805 | 0.35624 | 0.9427 | 4.88481 | 0.72885 | 1 | 2 |
| SRR5085898 | 101 | 52,728,822 | 0.34928 | 0.9415 | 5.13768 | 0.77332 | 1 | 3 |
| SRR5085899 | 101 | 69,120,545 | 0.3593 | 0.936 | 5.39731 | 0.78471 | 1 | 3 |
| SRR5085900 | 101 | 56,844,981 | 0.31525 | 0.9382 | 5.63908 | 0.8001 | 1 | 3 |
| Sample name | Tfit total bidirs | Tfit promoter bidirs | Tfit intronic bidirs | Tfit intergenic bidirs | dREG total bidirs | dREG promoter bidirs | dREG intronic bidirs | dREG intergenic bidirs |
| SRR5085734 | 54506 | 10498 | 25208 | 12699 | 30636 | 5751 | 15657 | 6959 |
| SRR5085735 | 28490 | 5422 | 12780 | 7077 | 20997 | 4272 | 10653 | 4605 |
| SRR5085736 | 26890 | 5415 | 11818 | 6983 | 24161 | 4463 | 11953 | 6332 |
| SRR5085737 | 62981 | 12308 | 29641 | 14311 | 37150 | 6047 | 19609 | 8624 |
| SRR5085738 | 42506 | 7972 | 19710 | 9640 | 30077 | 5217 | 16009 | 6340 |
| SRR5085739 | 39313 | 6607 | 18610 | 9244 | 29072 | 4669 | 15770 | 6137 |
| SRR5085894 | 27407 | 10947 | 10476 | 4559 | 18423 | 6578 | 7386 | 3497 |
| SRR5085895 | 20073 | 7276 | 8397 | 1541 | 15454 | 5269 | 6517 | 1730 |
| SRR5085896 | 19315 | 7429 | 7646 | 1995 | 13736 | 5192 | 5498 | 1778 |
| SRR5085897 | 23449 | 9173 | 9391 | 3058 | 14372 | 5780 | 5648 | 2147 |
| SRR5085898 | 26290 | 10102 | 10004 | 4123 | 17572 | 6088 | 7202 | 3233 |
| SRR5085899 | 26169 | 10142 | 9544 | 4519 | 19987 | 6339 | 8376 | 3996 |
| SRR5085900 | 34926 | 12956 | 12603 | 7396 | 22652 | 6912 | 9247 | 5227 |
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