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Downloads

Gene read counts	Bidirectional read counts	Tfit regions	dREG regions
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For TDF visualization files please see individual sample downloads or dataset pages for prebuilt archives.

Technical details

Sample name	Sample ID	Paper identifier	Protocol	Library prep	Control/Experimental	QC score	Replicate	Outlier?
SRR892016	2723	Yang2013lncrna	GRO-seq	circularization	control	2	1	No
SRR892017	2724	Yang2013lncrna	GRO-seq	circularization	experimental	2	1	No
SRR892018	2725	Yang2013lncrna	GRO-seq	circularization	experimental	2	1	No
SRR892019	2726	Yang2013lncrna	GRO-seq	circularization	experimental	2	1	No
SRR892025	2727	Yang2013lncrna	GRO-seq	circularization	control	1	1	No
SRR892026	2728	Yang2013lncrna	GRO-seq	circularization	experimental	1	1	No
SRR892027	2729	Yang2013lncrna	GRO-seq	circularization	experimental	1	1	No
SRR892028	2730	Yang2013lncrna	GRO-seq	circularization	experimental	3	1	No
SRR892029	2731	Yang2013lncrna	GRO-seq	circularization	experimental	1	1	No
SRR892030	2732	Yang2013lncrna	GRO-seq	circularization	experimental	1	1	No

Cellular details

Sample name	Organism	Sample type	Cell type	Clone/Individual	Strain	Genotype	Construct
SRR892016	H. sapiens	cell line	LNCaP				siRNA control
SRR892017	H. sapiens	cell line	LNCaP				siRNA control
SRR892018	H. sapiens	cell line	LNCaP				siRNA Pygo2
SRR892019	H. sapiens	cell line	LNCaP				siRNA Pygo2
SRR892025	H. sapiens	cell line	LNCaP				siRNA control
SRR892026	H. sapiens	cell line	LNCaP				siRNA Pcgem1
SRR892027	H. sapiens	cell line	LNCaP				siRNA Prncr1
SRR892028	H. sapiens	cell line	LNCaP				siRNA control
SRR892029	H. sapiens	cell line	LNCaP				siRNA Pcgem1
SRR892030	H. sapiens	cell line	LNCaP				siRNA Prncr1

Conditions

Sample name	Condition type	Treatment	Start time	End time	Duration
SRR892016	no treatment		None	None	None
SRR892017	treatment	dihydrotestosterone (100 nM)	-1 hr	0 hr	1 hr
SRR892018	no treatment		None	None	None
SRR892019	treatment	dihydrotestosterone (100 nM)	-1 hr	0 hr	1 hr
SRR892025	no treatment		None	None	None
SRR892026	no treatment		None	None	None
SRR892027	no treatment		None	None	None
SRR892028	treatment	dihydrotestosterone (100 nM)	-1 hr	0 hr	1 hr
SRR892029	treatment	dihydrotestosterone (100 nM)	-1 hr	0 hr	1 hr
SRR892030	treatment	dihydrotestosterone (100 nM)	-1 hr	0 hr	1 hr

Sample metrics

Sample name	Raw read length	Trim read depth	Duplication proportion	Proportion reads mapped	Exon/intron ratio	Unique read proportion	Sample QC score	Sample NRO score
SRR892016	44	21,343,085	0.56289	0.8408	2.23625	0.45678	2	1
SRR892017	44	25,904,577	0.56683	0.8565	2.31386	0.45731	2	1
SRR892018	44	27,526,408	0.52458	0.8634	2.24526	0.50866	2	1
SRR892019	44	19,537,529	0.5657	0.8588	2.46925	0.45153	2	1
SRR892025	42	21,384,449	0.49128	0.8718	2.6367	0.54389	1	1
SRR892026	42	25,519,465	0.43234	0.8927	2.2133	0.5965	1	1
SRR892027	42	38,021,719	0.39595	0.8821	1.85338	0.67007	1	1
SRR892028	42	10,584,519	0.69632	0.8246	2.81429	0.29334	3	1
SRR892029	42	28,323,951	0.37467	0.8888	2.00685	0.65878	1	1
SRR892030	42	29,629,604	0.37714	0.8832	1.96905	0.67063	1	1

Bidirectionals

Sample name	Tfit total bidirs	Tfit promoter bidirs	Tfit intronic bidirs	Tfit intergenic bidirs	dREG total bidirs	dREG promoter bidirs	dREG intronic bidirs	dREG intergenic bidirs
SRR892016	12306	5583	5062	1526	8082	4512	2526	1248
SRR892017	15057	7072	5927	1889	10399	5628	3330	1549
SRR892018	18988	8755	7701	2637	14002	7184	4936	2103
SRR892019	13995	6829	5419	1616	9291	5473	2774	1178
SRR892025	24499	9439	10786	4045	16315	7532	6175	2820
SRR892026	24482	9469	10690	4124	16643	7193	6549	3103
SRR892027	26745	9467	11349	5517	21204	7392	9135	4634
SRR892028	9097	4850	3329	773	6934	4748	1753	653
SRR892029	24631	9990	10231	4379	18832	7807	7636	3553
SRR892030	25846	9801	11039	4827	19814	7822	8310	3888