Daniel2018nuclear
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TDFs (visualization files) Zip archive 250 Mb
Read counts and bidirectional calls Zip archive 44 Mb
Paper Details
SRP accession SRP073648
GEO accession , GSE110464
Protocol GRO-seq
Organisms M. musculus
Library Prep ligation
Spike-in
Published Yes
Year 2018
First Author Daniel
Last Author Nagy
DOI 10.1016/j.immuni.2018.09.005
Full citation Bence Daniel, Gergely Nagy, Zsolt Czimmerer, Attila Horvath, David W. Hammers, Ixchelt Cuaranta-Monroy, Szilard Poliska, Petros Tzerpos, Zsuzsanna Kolostyak, Tristan T. Hays, Andreas Patsalos, Rene Houtman, Sascha Sauer, Jean Francois-Deleuze, Fraydoon Rastinejad, Balint L. Balint, H. Lee Sweeney, and Laszlo Nagy. The nuclear receptor ppar-gamma controls progressive macrophage polarization as a ligand-insensitive epigenomic ratchet of transcriptional memory. Immunity, 49(4):615-626, 2018.
Median QC score
Information
3.0
ATAC-seq? Yes
RNA-seq? Yes
ChIP-seq? Yes
3D Seq? No
Other Seq? No