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SRR3051599,SRR3051600,SRR3051601,...
| Gene read counts | Bidirectional read counts | Tfit regions | dREG regions |
| ZIP archive | ZIP archive | ZIP archive | ZIP archive |
| For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives. | |||
| Sample name | Sample ID | Paper identifier | Protocol | Library prep | Control/Experimental | Wildtype & Untreated | QC score | Replicate |
| SRR3051599 | 402 | Busslinger2017cohesin | GRO-seq | ligation | control | False | 3 | 1 |
| SRR3051600 | 403 | Busslinger2017cohesin | GRO-seq | ligation | control | False | 1 | 1 |
| SRR3051601 | 404 | Busslinger2017cohesin | GRO-seq | ligation | control | True | 1 | 2 |
| SRR3051602 | 405 | Busslinger2017cohesin | GRO-seq | ligation | control | False | 1 | 1 |
| SRR3051603 | 406 | Busslinger2017cohesin | GRO-seq | ligation | experimental | False | 5 | 3 |
| SRR3051604 | 407 | Busslinger2017cohesin | GRO-seq | ligation | experimental | False | 5 | 2 |
| SRR3051605 | 408 | Busslinger2017cohesin | GRO-seq | ligation | experimental | False | 5 | 4 |
| SRR3051606 | 409 | Busslinger2017cohesin | GRO-seq | ligation | experimental | False | 5 | 3 |
| SRR3657419 | 410 | Busslinger2017cohesin | GRO-seq | ligation | experimental | False | 5 | 1 |
| SRR3657420 | 411 | Busslinger2017cohesin | GRO-seq | ligation | experimental | False | 2 | 1 |
| Sample name | Organism | Sample type | Cell type | Clone/Individual | Strain | Genotype | Construct |
| SRR3051599 | M. musculus | cell line | MEF | C57BL/6 | tamoxifen-inducible Cre/+ | ||
| SRR3051600 | M. musculus | cell line | MEF | C57BL/6 | tamoxifen-inducible Cre/+ | ||
| SRR3051601 | M. musculus | cell line | MEF | C57BL/6 | |||
| SRR3051602 | M. musculus | cell line | MEF | C57BL/6 | |||
| SRR3051603 | M. musculus | cell line | MEF | C57BL/6 | Ctcf fl/fl; WapI fl/fl | ||
| SRR3051604 | M. musculus | cell line | MEF | C57BL/6 | Ctcf fl/fl; WapI fl/fl | ||
| SRR3051605 | M. musculus | cell line | MEF | C57BL/6 | Ctcf fl/fl; WapI fl/fl | ||
| SRR3051606 | M. musculus | cell line | MEF | C57BL/6 | Ctcf fl/fl; WapI fl/fl | ||
| SRR3657419 | M. musculus | cell line | MEF | C57BL/6 | Ctcf fl/fl; WapI fl/fl | ||
| SRR3657420 | M. musculus | cell line | MEF | C57BL/6 | Ctcf fl/fl; WapI fl/fl |
| Sample name | Condition type | Treatment | Start time | End time | Duration |
| SRR3051599 | no treatment | None | None | None | |
| SRR3051600 | treatment | hydroxytamoxifen | -300 hr | -240 hr | 60 hr |
| SRR3051601 | no treatment | None | None | None | |
| SRR3051602 | treatment | adeno-Cre virus (1 microL/million cells) | -244 hr | -240 hr | 4 hr |
| SRR3051603 | no treatment | None | None | None | |
| SRR3051604 | treatment | adeno-Cre virus (1 microL/million cells) | -244 hr | -240 hr | 4 hr |
| SRR3051605 | no treatment | None | None | None | |
| SRR3051606 | treatment | adeno-Cre virus (1 microL/million cells) | -244 hr | -240 hr | 4 hr |
| SRR3657419 | treatment | DRB (100 microM) | -210 min | 0 min | 210 min |
| treatment | adeno-Cre virus (1 microL/million cells) | -244 hr | -240 hr | 4 hr | |
| SRR3657420 | treatment | DRB (100 microM) | -1650 min | -1440 min | 210 min |
| treatment | adeno-Cre virus (1 microL/million cells) | -268 hr | -264 hr | 4 hr |
| Sample name | Raw read length | Trim read depth | Duplication proportion | Proportion reads mapped | Exon/intron ratio | Unique read proportion | Sample QC score | Sample NRO score |
| SRR3051599 | 18 | 15,451,726 | 0.34991 | 0.7557 | 2.63908 | 0.67453 | 3 | 1 |
| SRR3051600 | 18 | 28,235,660 | 0.37837 | 0.7144 | 2.26621 | 0.6989 | 1 | 1 |
| SRR3051601 | 18 | 27,271,477 | 0.38642 | 0.9482 | 1.95085 | 0.76038 | 1 | 2 |
| SRR3051602 | 18 | 27,319,779 | 0.33036 | 0.8954 | 1.71697 | 0.81209 | 1 | 2 |
| SRR3051603 | 18 | 3,554,903 | 0.07686 | 0.5481 | 2.08182 | 0.84 | 5 | 1 |
| SRR3051604 | 18 | 2,583,942 | 0.19909 | 0.5644 | 2.69697 | 0.62795 | 5 | 1 |
| SRR3051605 | 18 | 3,820,395 | 0.12561 | 0.5475 | 1.53333 | 0.77158 | 5 | 1 |
| SRR3051606 | 18 | 1,447,803 | 0.22124 | 0.5782 | 7.0 | 0.42317 | 5 | 4 |
| SRR3657419 | 18 | 3,587,015 | 0.55208 | 0.7964 | 6.38636 | 0.24772 | 5 | 3 |
| SRR3657420 | 18 | 18,255,221 | 0.4818 | 0.8946 | 2.80932 | 0.59694 | 2 | 2 |
| Sample name | Tfit total bidirs | Tfit promoter bidirs | Tfit intronic bidirs | Tfit intergenic bidirs | dREG total bidirs | dREG promoter bidirs | dREG intronic bidirs | dREG intergenic bidirs |
| SRR3051599 | 24014 | 8885 | 9254 | 3991 | 16346 | 7053 | 5858 | 2330 |
| SRR3051600 | 23090 | 9251 | 8069 | 3971 | 17665 | 6956 | 6447 | 2750 |
| SRR3051601 | 39766 | 11204 | 13473 | 12498 | 30450 | 8568 | 12542 | 7845 |
| SRR3051602 | 31152 | 8801 | 10637 | 9292 | 24337 | 7583 | 9616 | 5717 |
| SRR3051603 | 1561 | 702 | 389 | 143 | 419 | 109 | 88 | 110 |
| SRR3051604 | 4515 | 2324 | 1275 | 482 | 1033 | 597 | 192 | 130 |
| SRR3051605 | 1675 | 834 | 433 | 154 | 349 | 132 | 69 | 69 |
| SRR3051606 | 2888 | 1419 | 688 | 225 | 654 | 244 | 127 | 137 |
| SRR3657419 | 16663 | 5417 | 7546 | 2817 | 13788 | 5927 | 5381 | 1840 |
| SRR3657420 | 60511 | 10594 | 25065 | 21828 | 41818 | 9626 | 17399 | 13626 |
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