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Downloads

Gene read counts	Bidirectional read counts	Tfit regions	dREG regions
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Technical details

Sample name	Sample ID	Paper identifier	Protocol	Library prep	Control/Experimental	Wildtype & Untreated	QC score	Replicate
SRR8608051	2180	Sathyan2019improved	PRO-seq	ligation	experimental	False	3	1
SRR8608052	2181	Sathyan2019improved	PRO-seq	ligation	experimental	False	3	2
SRR8608053	2182	Sathyan2019improved	PRO-seq	ligation	experimental	False	3	1
SRR8608054	2183	Sathyan2019improved	PRO-seq	ligation	experimental	False	3	2
SRR8608055	2184	Sathyan2019improved	PRO-seq	ligation	experimental	False	2	1
SRR8608056	2185	Sathyan2019improved	PRO-seq	ligation	experimental	False	1	2
SRR8608057	2186	Sathyan2019improved	PRO-seq	ligation	experimental	False	3	3
SRR8608058	2187	Sathyan2019improved	PRO-seq	ligation	experimental	False	3	4
SRR8608059	2188	Sathyan2019improved	PRO-seq	ligation	experimental	False	3	1
SRR8608060	2189	Sathyan2019improved	PRO-seq	ligation	experimental	False	3	2
SRR8608061	2190	Sathyan2019improved	PRO-seq	ligation	experimental	False	2	3
SRR8608062	2191	Sathyan2019improved	PRO-seq	ligation	experimental	False	4	4
SRR8608063	2192	Sathyan2019improved	PRO-seq	ligation	experimental	False	3	1
SRR8608064	2193	Sathyan2019improved	PRO-seq	ligation	experimental	False	2	2
SRR8608065	2194	Sathyan2019improved	PRO-seq	ligation	experimental	False	3	3
SRR8608066	2195	Sathyan2019improved	PRO-seq	ligation	experimental	False	3	4
SRR8608067	2196	Sathyan2019improved	PRO-seq	ligation	experimental	False	2	1
SRR8608068	2197	Sathyan2019improved	PRO-seq	ligation	experimental	False	1	2
SRR8608069	2198	Sathyan2019improved	PRO-seq	ligation	experimental	False	3	3
SRR8608070	2199	Sathyan2019improved	PRO-seq	ligation	experimental	False	3	4
SRR8608071	2200	Sathyan2019improved	PRO-seq	ligation	experimental	False	2	1
SRR8608072	2201	Sathyan2019improved	PRO-seq	ligation	experimental	False	1	2
SRR8608073	2202	Sathyan2019improved	PRO-seq	ligation	experimental	False	5	3
SRR8608074	2203	Sathyan2019improved	PRO-seq	ligation	experimental	False	2	4

Cellular details

Sample name	Organism	Sample type	Cell type	Clone/Individual	Strain	Genotype	Construct
SRR8608051	H. sapiens	cell line	HEK293T			Znf143 auxin-inducible degron; Tir1 knock-in
SRR8608052	H. sapiens	cell line	HEK293T			Znf143 auxin-inducible degron; Tir1 knock-in
SRR8608053	H. sapiens	cell line	HEK293T			Znf143 auxin-inducible degron; Tir1 knock-in
SRR8608054	H. sapiens	cell line	HEK293T			Znf143 auxin-inducible degron; Tir1 knock-in
SRR8608055	H. sapiens	cell line	HEK293T			Znf143 auxin-inducible degron; Tir1 knock-in
SRR8608056	H. sapiens	cell line	HEK293T			Znf143 auxin-inducible degron; Tir1 knock-in
SRR8608057	H. sapiens	cell line	HEK293T			Znf143 auxin-inducible degron; Tir1 knock-in
SRR8608058	H. sapiens	cell line	HEK293T			Znf143 auxin-inducible degron; Tir1 knock-in
SRR8608059	H. sapiens	cell line	HEK293T			Znf143 auxin-inducible degron; Tir1 knock-in
SRR8608060	H. sapiens	cell line	HEK293T			Znf143 auxin-inducible degron; Tir1 knock-in
SRR8608061	H. sapiens	cell line	HEK293T			Znf143 auxin-inducible degron; Tir1 knock-in
SRR8608062	H. sapiens	cell line	HEK293T			Znf143 auxin-inducible degron; Tir1 knock-in
SRR8608063	H. sapiens	cell line	HEK293T			Znf143 auxin-inducible degron; Tir1 knock-in; Arf16-PB1 knock-in
SRR8608064	H. sapiens	cell line	HEK293T			Znf143 auxin-inducible degron; Tir1 knock-in; Arf16-PB1 knock-in
SRR8608065	H. sapiens	cell line	HEK293T			Znf143 auxin-inducible degron; Tir1 knock-in; Arf16-PB1 knock-in
SRR8608066	H. sapiens	cell line	HEK293T			Znf143 auxin-inducible degron; Tir1 knock-in; Arf16-PB1 knock-in
SRR8608067	H. sapiens	cell line	HEK293T			Znf143 auxin-inducible degron; Tir1 knock-in; Arf16-PB1 knock-in
SRR8608068	H. sapiens	cell line	HEK293T			Znf143 auxin-inducible degron; Tir1 knock-in; Arf16-PB1 knock-in
SRR8608069	H. sapiens	cell line	HEK293T			Znf143 auxin-inducible degron; Tir1 knock-in; Arf16-PB1 knock-in
SRR8608070	H. sapiens	cell line	HEK293T			Znf143 auxin-inducible degron; Tir1 knock-in; Arf16-PB1 knock-in
SRR8608071	H. sapiens	cell line	HEK293T			Znf143 auxin-inducible degron; Tir1 knock-in
SRR8608072	H. sapiens	cell line	HEK293T			Znf143 auxin-inducible degron; Tir1 knock-in
SRR8608073	H. sapiens	cell line	HEK293T			Znf143 auxin-inducible degron; Tir1 knock-in
SRR8608074	H. sapiens	cell line	HEK293T			Znf143 auxin-inducible degron; Tir1 knock-in

Conditions

Sample name	Condition type	Treatment	Start time	End time	Duration
SRR8608051	vehicle	DMSO	-3 hr	0 hr	3 hr
SRR8608052	vehicle	DMSO	-3 hr	0 hr	3 hr
SRR8608053	treatment	auxin (500 microM)	-3 hr	0 hr	3 hr
SRR8608054	treatment	auxin (500 microM)	-3 hr	0 hr	3 hr
SRR8608055	no treatment		None	None	None
SRR8608056	no treatment		None	None	None
SRR8608057	no treatment		None	None	None
SRR8608058	no treatment		None	None	None
SRR8608059	no treatment		None	None	None
SRR8608060	no treatment		None	None	None
SRR8608061	no treatment		None	None	None
SRR8608062	no treatment		None	None	None
SRR8608063	no treatment		None	None	None
SRR8608064	no treatment		None	None	None
SRR8608065	no treatment		None	None	None
SRR8608066	no treatment		None	None	None
SRR8608067	treatment	auxin (500 microM)	-90 min	0 min	90 min
SRR8608068	treatment	auxin (500 microM)	-90 min	0 min	90 min
SRR8608069	treatment	auxin (500 microM)	-90 min	0 min	90 min
SRR8608070	treatment	auxin (500 microM)	-90 min	0 min	90 min
SRR8608071	treatment	auxin (500 microM)	-90 min	0 min	90 min
SRR8608072	treatment	auxin (500 microM)	-90 min	0 min	90 min
SRR8608073	treatment	auxin (500 microM)	-90 min	0 min	90 min
SRR8608074	treatment	auxin (500 microM)	-90 min	0 min	90 min

Sample metrics

Sample name	Raw read length	Trim read depth	Duplication proportion	Proportion reads mapped	Exon/intron ratio	Unique read proportion	Sample QC score	Sample NRO score
SRR8608051	75	16,722,870	0.21872	0.5471	3.73832	0.77731	3	2
SRR8608052	75	19,695,769	0.22244	0.458	3.13231	0.77285	3	2
SRR8608053	75	17,450,289	0.17542	0.5188	3.16471	0.81967	3	2
SRR8608054	75	17,234,709	0.19598	0.553	3.22989	0.80141	3	2
SRR8608055	35	20,564,653	0.10847	0.6666	3.41818	0.83582	2	2
SRR8608056	35	25,597,924	0.09036	0.6717	2.93546	0.86677	1	1
SRR8608057	35	12,778,088	0.07481	0.7067	2.94533	0.85048	3	1
SRR8608058	35	11,895,058	0.07205	0.6735	2.98966	0.86241	3	1
SRR8608059	35	14,894,382	0.07202	0.6754	2.5881	0.86068	3	1
SRR8608060	35	16,631,640	0.0985	0.7215	3.10879	0.8232	3	2
SRR8608061	35	20,109,136	0.0829	0.6967	2.74936	0.85688	2	1
SRR8608062	35	11,400,946	0.08157	0.6591	3.24183	0.84203	4	2
SRR8608063	35	17,449,829	0.1241	0.6616	3.29412	0.80258	3	2
SRR8608064	35	23,493,337	0.09454	0.6733	3.03994	0.84535	2	2
SRR8608065	35	16,182,168	0.08521	0.6793	3.06749	0.84313	3	2
SRR8608066	35	14,270,774	0.07419	0.6672	3.03038	0.8601	3	2
SRR8608067	35	21,808,371	0.09777	0.6592	3.09949	0.84906	2	2
SRR8608068	35	24,244,892	0.09818	0.6697	3.22307	0.84892	1	2
SRR8608069	35	13,476,299	0.07825	0.6165	2.9214	0.84228	3	1
SRR8608070	35	14,091,152	0.08093	0.5836	2.96557	0.86085	3	1
SRR8608071	35	21,764,884	0.09699	0.6632	3.17189	0.84867	2	2
SRR8608072	35	24,208,648	0.09409	0.663	3.00075	0.85256	1	2
SRR8608073	35	3,246,944	0.06529	0.6801	2.95652	0.7641	5	1
SRR8608074	35	18,904,258	0.08418	0.7374	3.13532	0.8661	2	2

Bidirectionals

Sample name	Tfit total bidirs	Tfit promoter bidirs	Tfit intronic bidirs	Tfit intergenic bidirs	dREG total bidirs	dREG promoter bidirs	dREG intronic bidirs	dREG intergenic bidirs
SRR8608051	19521	10149	7487	2003	12271	8161	3868	797
SRR8608052	15843	8028	6030	1713	9637	6855	2721	556
SRR8608053	20169	10182	8096	2055	11518	7624	3728	735
SRR8608054	19430	10069	7711	1956	11626	7747	3713	799
SRR8608055	27522	14079	10449	3594	16421	8499	5713	1992
SRR8608056	27206	13888	10066	3734	17003	8556	6084	2203
SRR8608057	21832	11727	8190	2384	12041	7459	3591	1131
SRR8608058	20038	10333	7882	2219	11589	7459	3524	1008
SRR8608059	24568	12978	8938	2816	12279	7608	3636	1289
SRR8608060	26568	13826	9614	3321	14055	8018	4357	1590
SRR8608061	26856	13780	9772	3244	13991	7751	4442	1688
SRR8608062	23023	11920	8853	2351	11011	6958	3193	1008
SRR8608063	26436	14265	9801	2982	14879	8566	4720	1610
SRR8608064	28313	14859	10101	3692	16277	8496	5441	2060
SRR8608065	25053	13173	9229	2909	13744	8050	4326	1445
SRR8608066	23769	11917	9489	2617	12599	7524	4002	1230
SRR8608067	27921	14253	10417	3667	16248	8546	5535	1981
SRR8608068	27875	14105	10435	3730	16342	8217	5654	2050
SRR8608069	20711	11141	7575	2134	10205	6466	2915	952
SRR8608070	22335	11395	8813	2367	11099	7009	3317	1035
SRR8608071	27742	14099	10238	3706	15924	8384	5354	1995
SRR8608072	26733	13900	9513	3536	15491	8116	5119	1960
SRR8608073	6888	3951	2235	563	1782	1196	407	207
SRR8608074	27942	13102	11167	3668	15485	8120	5362	1916