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SRR3923617,SRR3923618,SRR3923619,...
| Gene read counts | Bidirectional read counts | Tfit regions | dREG regions |
| ZIP archive | ZIP archive | ZIP archive | ZIP archive |
| For TDF visualization files please see individual sample downloads or dataset pages for prebuilt archives. | |||
| Sample name | Sample ID | Paper identifier | Protocol | Library prep | Control/Experimental | QC score | Replicate | Outlier? |
| SRR3923617 | 2489 | Toropainen2016global | GRO-seq | circularization | control | 1 | 1 | No |
| SRR3923618 | 2490 | Toropainen2016global | GRO-seq | circularization | control | 1 | 2 | No |
| SRR3923619 | 2491 | Toropainen2016global | GRO-seq | circularization | experimental | 1 | 1 | No |
| SRR3923620 | 2492 | Toropainen2016global | GRO-seq | circularization | experimental | 1 | 2 | No |
| SRR3923621 | 2493 | Toropainen2016global | GRO-seq | circularization | experimental | 1 | 1 | No |
| SRR3923622 | 2494 | Toropainen2016global | GRO-seq | circularization | experimental | 1 | 2 | No |
| SRR4001595 | 2495 | Toropainen2016global | GRO-seq | circularization | control | 3 | 1 | No |
| SRR4001596 | 2496 | Toropainen2016global | GRO-seq | circularization | control | 2 | 2 | No |
| SRR4001597 | 2497 | Toropainen2016global | GRO-seq | circularization | experimental | 2 | 1 | No |
| SRR4001598 | 2498 | Toropainen2016global | GRO-seq | circularization | experimental | 2 | 2 | No |
| Sample name | Organism | Sample type | Cell type | Clone/Individual | Strain | Genotype | Construct |
| SRR3923617 | H. sapiens | cell line | VCaP | ||||
| SRR3923618 | H. sapiens | cell line | VCaP | ||||
| SRR3923619 | H. sapiens | cell line | VCaP | ||||
| SRR3923620 | H. sapiens | cell line | VCaP | ||||
| SRR3923621 | H. sapiens | cell line | VCaP | ||||
| SRR3923622 | H. sapiens | cell line | VCaP | ||||
| SRR4001595 | H. sapiens | cell line | VCaP | ||||
| SRR4001596 | H. sapiens | cell line | VCaP | ||||
| SRR4001597 | H. sapiens | cell line | VCaP | ||||
| SRR4001598 | H. sapiens | cell line | VCaP |
| Sample name | Condition type | Treatment | Start time | End time | Duration |
| SRR3923617 | vehicle | ethanol | -2 hr | 0 hr | 2 hr |
| SRR3923618 | vehicle | ethanol | -2 hr | 0 hr | 2 hr |
| SRR3923619 | treatment | R1881 (10 nM) | -30 min | 0 min | 30 min |
| SRR3923620 | treatment | R1881 (10 nM) | -30 min | 0 min | 30 min |
| SRR3923621 | treatment | R1881 (10 nM) | -2 hr | 0 hr | 2 hr |
| SRR3923622 | treatment | R1881 (10 nM) | -2 hr | 0 hr | 2 hr |
| SRR4001595 | vehicle | ethanol | -4 hr | 0 hr | 4 hr |
| SRR4001596 | vehicle | ethanol | -4 hr | 0 hr | 4 hr |
| SRR4001597 | treatment | dihydrotestosterone (100 nM) | -4 hr | 0 hr | 4 hr |
| SRR4001598 | treatment | dihydrotestosterone (100 nM) | -4 hr | 0 hr | 4 hr |
| Sample name | Raw read length | Trim read depth | Duplication proportion | Proportion reads mapped | Exon/intron ratio | Unique read proportion | Sample QC score | Sample NRO score |
| SRR3923617 | 51 | 20,432,910 | 0.33755 | 0.9399 | 3.04798 | 0.69077 | 1 | 2 |
| SRR3923618 | 51 | 21,969,118 | 0.30584 | 0.9434 | 2.99205 | 0.73101 | 1 | 1 |
| SRR3923619 | 51 | 24,051,290 | 0.32097 | 0.9415 | 2.87211 | 0.71973 | 1 | 1 |
| SRR3923620 | 51 | 24,241,483 | 0.31956 | 0.9457 | 2.70892 | 0.72818 | 1 | 1 |
| SRR3923621 | 51 | 27,742,719 | 0.35358 | 0.9501 | 2.40211 | 0.72389 | 1 | 1 |
| SRR3923622 | 51 | 22,411,224 | 0.33103 | 0.947 | 2.32506 | 0.72318 | 1 | 1 |
| SRR4001595 | 51 | 14,531,989 | 0.29478 | 0.8905 | 2.12524 | 0.72172 | 3 | 1 |
| SRR4001596 | 51 | 17,664,745 | 0.32829 | 0.8831 | 2.40887 | 0.7024 | 2 | 1 |
| SRR4001597 | 51 | 16,349,037 | 0.32568 | 0.8856 | 2.03735 | 0.70173 | 2 | 1 |
| SRR4001598 | 51 | 18,642,585 | 0.3323 | 0.8798 | 2.00877 | 0.70679 | 2 | 1 |
| Sample name | Tfit total bidirs | Tfit promoter bidirs | Tfit intronic bidirs | Tfit intergenic bidirs | dREG total bidirs | dREG promoter bidirs | dREG intronic bidirs | dREG intergenic bidirs |
| SRR3923617 | 30235 | 11889 | 12386 | 5996 | 23385 | 9296 | 9504 | 4757 |
| SRR3923618 | 34179 | 13062 | 13847 | 7273 | 26654 | 9691 | 11108 | 5906 |
| SRR3923619 | 34452 | 13180 | 13928 | 7199 | 26735 | 9566 | 11243 | 5874 |
| SRR3923620 | 32851 | 12159 | 13575 | 7080 | 27081 | 9734 | 11464 | 5984 |
| SRR3923621 | 31883 | 12535 | 12953 | 6290 | 26265 | 9481 | 11197 | 5535 |
| SRR3923622 | 27321 | 10446 | 11518 | 5340 | 23312 | 8928 | 9900 | 4733 |
| SRR4001595 | 19685 | 6415 | 8981 | 3786 | 12791 | 5362 | 5215 | 2449 |
| SRR4001596 | 20527 | 6571 | 9354 | 4037 | 14375 | 5855 | 5907 | 2856 |
| SRR4001597 | 18866 | 6729 | 8479 | 3320 | 13838 | 6165 | 5684 | 2295 |
| SRR4001598 | 19289 | 6783 | 8715 | 3325 | 13953 | 5961 | 5866 | 2418 |
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