Explore DBNascent | browse or search sample metadata
Search
All Samples
Samples By Dataset
Advanced Search
Paper Details
Steinparzer2019transcriptional
| TDFs (visualization files) | Zip archive | 3.8 Gb |
| Read counts and bidirectional calls | Zip archive | 208 Mb |
| SRP accession | SRP191474 , SRP197255 |
| GEO accession | GSE129501 , |
| Protocol | PRO-seq, GRO-seq |
| Organisms | H. sapiens, M. musculus |
| Library Prep | not noted in GEO or publication, random primed |
| Spike-in | |
| Published | Yes |
| Year | 2019 |
| First Author | Steinparzer |
| Last Author | Kovarik |
| DOI | 10.1016/j.molcel.2019.07.034 |
| Full citation | Iris Steinparzer, Vitaly Sedlyarov, Jonathan D. Rubin, Kevin Eislmayr, Matthew D. Galbraith, Cecilia B. Levandowski, Terezia Vcelkova, Lucy Sneezum, Florian Wascher, Fabian Amman, Renata Kleinova, Heather Bender, Zdenek Andrysik, Joaquin M. Espinosa, Giulio Superti-Furga, Robin D. Dowell, Dylan J. Taatjes, and Pavel Kovarik. Transcriptional responses to IFN-gamma require mediator kinase-dependent pause release and mechanistically distinct CDK8 and CDK19 functions. Molecular cell, 76(3):485-499, 2019. |
|
Median QC score
|
3.0 |
| ATAC-seq? | No |
| RNA-seq? | Yes |
| ChIP-seq? | No |
| 3D Seq? | No |
| Other Seq? | No |