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Jaeger2020selective
Samples in dataset (Table view)
SRR10354624
SRR10354625
SRR10354626
SRR10354627
SRZ10354600
SRZ10354602
SRZ10354604
SRZ10354606
SRZ10354608
SRZ10354610
SRZ10354612
SRZ10354614
SRZ10354616
SRZ10354618
SRZ10354620
SRZ10354622
SRR10354653
SRR10354654
SRR10354655
SRR10354656
SRR10354657
SRR10354658
SRR10354659
SRR10354660
SRR11273554
SRR11273555
SRR11273556
SRR11273557
SRR11273558
SRR11273559
SRR11273560
SRR11273561
SRZ10354637
SRZ10354639
SRZ10354641
SRZ10354643
SRZ10354645
SRZ10354647
SRZ10354649
SRZ10354651
Downloads (all samples in dataset)
TDFs (visualization files) Zip archive 11.8 Gb
Read counts and bidirectional calls Zip archive 324 Mb
Paper Details
SRP accession SRP227189 , SRP227191
GEO accession GSE139462 , GSE139463
Protocol PRO-seq, TT-seq
Organisms H. sapiens
Library Prep ligation, random primed
Spike-in D. melanogaster
Published Yes
Year 2020
First Author Jaeger
Last Author Winter
DOI 10.1038/s41588-020-0635-0
Full citation Martin G. Jaeger, Bjorn Schwalb, Sebastian D. Mackowiak, Taras Velychko, Alexander Hanzl, Hana Imrichova, Matthias Brand, Benedikt Agerer, Someth Chorn, Behnam Nabet, Fleur M. Ferguson, Andre C. Muller, Andreas Bergthaler, Nathanael S. Gray, James E. Bradner, Christoph Bock, Denes Hnisz, Patrick Cramer, and Georg E. Winter. Selective mediator dependence of cell-type-specifying transcription. Nature Genetics, 52(7):719-727, Jul 2020.
Median QC score
Information
1.0
ATAC-seq? No
RNA-seq? Yes
ChIP-seq? Yes
3D Seq? Yes
Other Seq? Yes