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Sample Details

SRR1611829,SRR1611830,SRR1611831,...

**Downloads**
Gene read counts	Bidirectional read counts	Tfit regions	dREG regions
ZIP archive	ZIP archive	ZIP archive	ZIP archive
For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives.

**Technical details**
Sample name	Sample ID	Paper identifier	Protocol	Library prep	Control/Experimental	Wildtype & Untreated	QC score	Replicate
SRR1611829	1825	Meng2014convergent	GRO-seq	ligation	control	False	4	1
SRR1611830	1826	Meng2014convergent	GRO-seq	ligation	control	False	4	2
SRR1611831	1827	Meng2014convergent	GRO-seq	ligation	control	False	4	3
SRR1611832	1828	Meng2014convergent	GRO-seq	ligation	control	False	4	1
SRR1611833	1829	Meng2014convergent	GRO-seq	ligation	control	False	4	2
SRR1611834	1830	Meng2014convergent	GRO-seq	ligation	control	False	4	3
SRR1611835	1831	Meng2014convergent	GRO-seq	ligation	experimental	False	3	1
SRR1611836	1832	Meng2014convergent	GRO-seq	ligation	experimental	False	4	2
SRR1611837	1833	Meng2014convergent	GRO-seq	ligation	experimental	False	3	3
SRR1611838	1834	Meng2014convergent	GRO-seq	ligation	control	False	3	1
SRR1611839	1835	Meng2014convergent	GRO-seq	ligation	control	False	3	2
SRR1611840	1836	Meng2014convergent	GRO-seq	ligation	control	True	2	1

**Cellular details**
Sample name	Organism	Sample type	Cell type	Clone/Individual	Strain	Genotype	Construct
SRR1611829	M. musculus	primary cell	splenic B cell			Vhb18 heavy chain knock-in
SRR1611830	M. musculus	primary cell	splenic B cell			Vhb18 heavy chain knock-in
SRR1611831	M. musculus	primary cell	splenic B cell			Vhb18 heavy chain knock-in
SRR1611832	M. musculus	primary cell	splenic germinal center B cell			Vhb18 heavy chain knock-in
SRR1611833	M. musculus	primary cell	splenic germinal center B cell			Vhb18 heavy chain knock-in
SRR1611834	M. musculus	primary cell	splenic germinal center B cell			Vhb18 heavy chain knock-in
SRR1611835	M. musculus	primary cell	splenic B cell			Vhb18 heavy chain knock-in
SRR1611836	M. musculus	primary cell	splenic B cell			Vhb18 heavy chain knock-in
SRR1611837	M. musculus	primary cell	splenic B cell			Vhb18 heavy chain knock-in
SRR1611838	M. musculus	cell line	MEF			Aid -/-
SRR1611839	M. musculus	cell line	MEF			Aid -/-
SRR1611840	H. sapiens	cell line	Ramos

**Conditions**
Sample name	Condition type	Treatment	Start time	End time	Duration
SRR1611829	no treatment		None	None	None
SRR1611830	no treatment		None	None	None
SRR1611831	no treatment		None	None	None
SRR1611832	no treatment		None	None	None
SRR1611833	no treatment		None	None	None
SRR1611834	no treatment		None	None	None
SRR1611835	treatment	anti-CD40 (500 ng/mL)	-60 hr	0 hr	60 hr
	treatment	interleukin-4 (25 ng/mL)	-60 hr	0 hr	60 hr
SRR1611836	treatment	anti-CD40 (500 ng/mL)	-60 hr	0 hr	60 hr
	treatment	interleukin-4 (25 ng/mL)	-60 hr	0 hr	60 hr
SRR1611837	treatment	anti-CD40 (500 ng/mL)	-60 hr	0 hr	60 hr
	treatment	interleukin-4 (25 ng/mL)	-60 hr	0 hr	60 hr
SRR1611838	no treatment		None	None	None
SRR1611839	no treatment		None	None	None
SRR1611840	no treatment		None	None	None

**Sample metrics**
Sample name	Raw read length	Trim read depth	Duplication proportion	Proportion reads mapped	Exon/intron ratio	Unique read proportion	Sample QC score	Sample NRO score
SRR1611829	51	81,808,241	0.82821	0.7961	2.64557	0.55067	4	2
SRR1611830	51	150,122,447	0.91485	0.9193	2.5015	0.52535	4	2
SRR1611831	51	161,705,575	0.87365	0.6443	2.76516	0.52099	4	2
SRR1611832	51	168,559,805	0.93167	0.8421	2.73425	0.54071	4	1
SRR1611833	51	198,305,796	0.92827	0.9037	2.48177	0.52146	4	2
SRR1611834	51	194,514,819	0.9265	0.8804	2.63675	0.50661	4	2
SRR1611835	51	178,627,917	0.72479	0.803	2.59426	0.64419	3	1
SRR1611836	51	202,327,151	0.87715	0.8816	2.31403	0.60542	4	1
SRR1611837	51	162,988,636	0.76626	0.8207	2.82047	0.7179	3	1
SRR1611838	51	137,118,204	0.7706	0.9356	2.13112	0.71811	3	1
SRR1611839	51	127,082,878	0.77115	0.9368	2.20222	0.71829	3	1
SRR1611840	51	106,118,963	0.59525	0.9325	2.37301	0.80648	2	1

**Bidirectionals**
Sample name	Tfit total bidirs	Tfit promoter bidirs	Tfit intronic bidirs	Tfit intergenic bidirs	dREG total bidirs	dREG promoter bidirs	dREG intronic bidirs	dREG intergenic bidirs
SRR1611829	14995	4530	6175	2795	20446	6864	8064	4248
SRR1611830	14986	3486	6964	2888	19064	5652	7544	4393
SRR1611831	16472	5324	6416	3084	21098	6869	7916	4792
SRR1611832	18841	5962	7441	3312	16499	5474	5956	3532
SRR1611833	19832	4617	9449	3881	20322	5658	8535	4634
SRR1611834	18911	4455	8846	3592	21383	5949	9208	4529
SRR1611835	28158	8666	10805	6228	37986	7410	16532	11252
SRR1611836	26758	6513	11878	5960	32985	7577	14169	8550
SRR1611837	31121	10059	11577	6669	37659	7551	15841	11021
SRR1611838	26362	7410	10442	5269	30991	6190	13226	8297
SRR1611839	27723	8021	10776	5490	29598	6361	12155	7719
SRR1611840	36385	11296	16196	7330	35209	6622	16806	10405