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SRZ8795359,SRZ8795367,SRZ8795375,...
| Gene read counts | Bidirectional read counts | Tfit regions | dREG regions |
| ZIP archive | ZIP archive | ZIP archive | ZIP archive |
| For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives. | |||
| Sample name | Sample ID | Paper identifier | Protocol | Library prep | Control/Experimental | Wildtype & Untreated | QC score | Replicate |
| SRZ8795359 | 1264 | Kriaucionis2019unpublished | PRO-cap | ligation | control | False | 4 | 1 |
| SRZ8795367 | 1265 | Kriaucionis2019unpublished | PRO-cap | ligation | control | False | 4 | 2 |
| SRZ8795375 | 1266 | Kriaucionis2019unpublished | PRO-cap | ligation | control | False | 4 | 3 |
| SRZ8795383 | 1267 | Kriaucionis2019unpublished | PRO-cap | ligation | experimental | False | 4 | 1 |
| SRZ8795391 | 1268 | Kriaucionis2019unpublished | PRO-cap | ligation | experimental | False | 4 | 2 |
| SRZ8795399 | 1269 | Kriaucionis2019unpublished | PRO-cap | ligation | experimental | False | 4 | 3 |
| SRZ8795407 | 1270 | Kriaucionis2019unpublished | PRO-cap | ligation | experimental | False | 4 | 1 |
| SRZ8795415 | 1271 | Kriaucionis2019unpublished | PRO-cap | ligation | experimental | False | 3 | 2 |
| SRZ8795423 | 1272 | Kriaucionis2019unpublished | PRO-cap | ligation | experimental | False | 4 | 3 |
| SRZ8795431 | 1273 | Kriaucionis2019unpublished | PRO-seq | ligation | control | False | 1 | 1 |
| SRZ8795439 | 1274 | Kriaucionis2019unpublished | PRO-seq | ligation | control | False | 1 | 2 |
| SRZ8795447 | 1275 | Kriaucionis2019unpublished | PRO-seq | ligation | control | False | 1 | 3 |
| SRZ8795455 | 1276 | Kriaucionis2019unpublished | PRO-seq | ligation | experimental | False | 1 | 1 |
| SRZ8795463 | 1277 | Kriaucionis2019unpublished | PRO-seq | ligation | experimental | False | 1 | 2 |
| SRZ8795471 | 1278 | Kriaucionis2019unpublished | PRO-seq | ligation | experimental | False | 1 | 3 |
| SRZ8795479 | 1279 | Kriaucionis2019unpublished | PRO-seq | ligation | experimental | False | 1 | 1 |
| SRZ8795487 | 1280 | Kriaucionis2019unpublished | PRO-seq | ligation | experimental | False | 1 | 2 |
| SRZ8795495 | 1281 | Kriaucionis2019unpublished | PRO-seq | ligation | experimental | False | 1 | 3 |
| Sample name | Organism | Sample type | Cell type | Clone/Individual | Strain | Genotype | Construct |
| SRZ8795359 | H. sapiens | cell line | HEK293T Flp-In | dox-inducible Tet-CD-GFP | |||
| SRZ8795367 | H. sapiens | cell line | HEK293T Flp-In | dox-inducible Tet-CD-GFP | |||
| SRZ8795375 | H. sapiens | cell line | HEK293T Flp-In | dox-inducible Tet-CD-GFP | |||
| SRZ8795383 | H. sapiens | cell line | HEK293T Flp-In | dox-inducible Tet-CD-GFP | |||
| SRZ8795391 | H. sapiens | cell line | HEK293T Flp-In | dox-inducible Tet-CD-GFP | |||
| SRZ8795399 | H. sapiens | cell line | HEK293T Flp-In | dox-inducible Tet-CD-GFP | |||
| SRZ8795407 | H. sapiens | cell line | HEK293T Flp-In | dox-inducible Tet-CD-GFP | |||
| SRZ8795415 | H. sapiens | cell line | HEK293T Flp-In | dox-inducible Tet-CD-GFP | |||
| SRZ8795423 | H. sapiens | cell line | HEK293T Flp-In | dox-inducible Tet-CD-GFP | |||
| SRZ8795431 | H. sapiens | cell line | HEK293T Flp-In | dox-inducible Tet-CD-GFP | |||
| SRZ8795439 | H. sapiens | cell line | HEK293T Flp-In | dox-inducible Tet-CD-GFP | |||
| SRZ8795447 | H. sapiens | cell line | HEK293T Flp-In | dox-inducible Tet-CD-GFP | |||
| SRZ8795455 | H. sapiens | cell line | HEK293T Flp-In | dox-inducible Tet-CD-GFP | |||
| SRZ8795463 | H. sapiens | cell line | HEK293T Flp-In | dox-inducible Tet-CD-GFP | |||
| SRZ8795471 | H. sapiens | cell line | HEK293T Flp-In | dox-inducible Tet-CD-GFP | |||
| SRZ8795479 | H. sapiens | cell line | HEK293T Flp-In | dox-inducible Tet-CD-GFP | |||
| SRZ8795487 | H. sapiens | cell line | HEK293T Flp-In | dox-inducible Tet-CD-GFP | |||
| SRZ8795495 | H. sapiens | cell line | HEK293T Flp-In | dox-inducible Tet-CD-GFP |
| Sample name | Condition type | Treatment | Start time | End time | Duration |
| SRZ8795359 | no treatment | None | None | None | |
| SRZ8795367 | no treatment | None | None | None | |
| SRZ8795375 | no treatment | None | None | None | |
| SRZ8795383 | treatment | 5-aza-2'-deoxycytidine (880 nM) | -2 day | 0 day | 2 day |
| SRZ8795391 | treatment | 5-aza-2'-deoxycytidine (880 nM) | -2 day | 0 day | 2 day |
| SRZ8795399 | treatment | 5-aza-2'-deoxycytidine (880 nM) | -2 day | 0 day | 2 day |
| SRZ8795407 | treatment | doxycycline (1 microg/mL) | -2 day | 0 day | 2 day |
| SRZ8795415 | treatment | doxycycline (1 microg/mL) | -2 day | 0 day | 2 day |
| SRZ8795423 | treatment | doxycycline (1 microg/mL) | -2 day | 0 day | 2 day |
| SRZ8795431 | no treatment | None | None | None | |
| SRZ8795439 | no treatment | None | None | None | |
| SRZ8795447 | no treatment | None | None | None | |
| SRZ8795455 | treatment | 5-aza-2'-deoxycytidine (880 nM) | -2 day | 0 day | 2 day |
| SRZ8795463 | treatment | 5-aza-2'-deoxycytidine (880 nM) | -2 day | 0 day | 2 day |
| SRZ8795471 | treatment | 5-aza-2'-deoxycytidine (880 nM) | -2 day | 0 day | 2 day |
| SRZ8795479 | treatment | doxycycline (1 microg/mL) | -2 day | 0 day | 2 day |
| SRZ8795487 | treatment | doxycycline (1 microg/mL) | -2 day | 0 day | 2 day |
| SRZ8795495 | treatment | doxycycline (1 microg/mL) | -2 day | 0 day | 2 day |
| Sample name | Raw read length | Trim read depth | Duplication proportion | Proportion reads mapped | Exon/intron ratio | Unique read proportion | Sample QC score | Sample NRO score |
| SRZ8795359 | 35 | 39,340,828 | 0.82559 | 0.5036 | 16.6966 | 0.29276 | 4 | 5 |
| SRZ8795367 | 35 | 39,075,323 | 0.81968 | 0.5209 | 16.9759 | 0.30419 | 4 | 5 |
| SRZ8795375 | 35 | 40,646,990 | 0.81551 | 0.5297 | 17.5261 | 0.31193 | 4 | 5 |
| SRZ8795383 | 35 | 36,434,080 | 0.80037 | 0.5159 | 16.8467 | 0.31559 | 4 | 5 |
| SRZ8795391 | 35 | 38,438,107 | 0.81027 | 0.5605 | 17.6562 | 0.31584 | 4 | 5 |
| SRZ8795399 | 35 | 39,962,879 | 0.81317 | 0.5906 | 19.1327 | 0.31719 | 4 | 5 |
| SRZ8795407 | 35 | 37,653,210 | 0.81104 | 0.4832 | 16.6008 | 0.30074 | 4 | 5 |
| SRZ8795415 | 35 | 36,371,923 | 0.7958 | 0.5711 | 17.9535 | 0.32489 | 3 | 5 |
| SRZ8795423 | 35 | 38,230,606 | 0.80196 | 0.5472 | 19.11 | 0.31852 | 4 | 5 |
| SRZ8795431 | 35 | 83,749,329 | 0.31441 | 0.278 | 4.29211 | 0.76038 | 1 | 2 |
| SRZ8795439 | 35 | 86,515,265 | 0.31247 | 0.3383 | 4.5319 | 0.79683 | 1 | 2 |
| SRZ8795447 | 35 | 82,826,733 | 0.3152 | 0.3515 | 4.49588 | 0.78959 | 1 | 2 |
| SRZ8795455 | 35 | 81,860,684 | 0.29716 | 0.3634 | 4.25424 | 0.81021 | 1 | 2 |
| SRZ8795463 | 35 | 78,508,679 | 0.29103 | 0.362 | 4.5 | 0.8134 | 1 | 2 |
| SRZ8795471 | 35 | 85,040,736 | 0.33057 | 0.3834 | 4.37306 | 0.7793 | 1 | 2 |
| SRZ8795479 | 35 | 82,775,659 | 0.30808 | 0.3509 | 4.02307 | 0.79183 | 1 | 2 |
| SRZ8795487 | 35 | 78,235,108 | 0.3115 | 0.3461 | 4.45949 | 0.78103 | 1 | 2 |
| SRZ8795495 | 35 | 78,854,001 | 0.3203 | 0.3653 | 4.48835 | 0.77915 | 1 | 2 |
| Sample name | Tfit total bidirs | Tfit promoter bidirs | Tfit intronic bidirs | Tfit intergenic bidirs | dREG total bidirs | dREG promoter bidirs | dREG intronic bidirs | dREG intergenic bidirs |
| SRZ8795359 | 28635 | 14519 | 10696 | 4857 | 24178 | 11350 | 9417 | 3596 |
| SRZ8795367 | 27980 | 13910 | 10572 | 4841 | 24017 | 10937 | 9396 | 3569 |
| SRZ8795375 | 30270 | 13778 | 11562 | 6093 | 25328 | 10814 | 9854 | 4382 |
| SRZ8795383 | 30288 | 14092 | 11618 | 5708 | 24733 | 11049 | 9693 | 3899 |
| SRZ8795391 | 31011 | 14074 | 12001 | 6055 | 25468 | 10852 | 10136 | 4262 |
| SRZ8795399 | 35557 | 13669 | 13654 | 9043 | 28345 | 10684 | 11007 | 6036 |
| SRZ8795407 | 29069 | 14311 | 10899 | 5145 | 23910 | 11148 | 9185 | 3594 |
| SRZ8795415 | 32878 | 13933 | 12415 | 7487 | 26644 | 10683 | 10443 | 5102 |
| SRZ8795423 | 32729 | 13044 | 12413 | 8000 | 26204 | 10448 | 9926 | 5181 |
| SRZ8795431 | 27160 | 15128 | 9927 | 2678 | 15859 | 7500 | 5797 | 1470 |
| SRZ8795439 | 29412 | 16500 | 10848 | 3088 | 17828 | 7452 | 7093 | 2000 |
| SRZ8795447 | 31206 | 16467 | 11320 | 3719 | 17819 | 7268 | 6821 | 2214 |
| SRZ8795455 | 26736 | 14769 | 9724 | 2879 | 16933 | 7386 | 6584 | 1754 |
| SRZ8795463 | 27361 | 15316 | 10057 | 2850 | 17205 | 7422 | 6559 | 1837 |
| SRZ8795471 | 29899 | 15424 | 10800 | 4097 | 18211 | 7386 | 6988 | 2406 |
| SRZ8795479 | 26386 | 14455 | 9582 | 2760 | 16390 | 7337 | 6163 | 1645 |
| SRZ8795487 | 28529 | 15232 | 10333 | 3518 | 17350 | 7493 | 6534 | 2032 |
| SRZ8795495 | 29706 | 15220 | 10864 | 3858 | 17468 | 7186 | 6622 | 2190 |
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