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Paper Details

Boxer2020mecp2
Samples in dataset (Table view)
SRR8714792
SRR8714793
SRR8714794
SRR8714795
SRR8714796
SRR8714797
SRR8714798
SRR8714799
SRR8714800
SRR8714801
SRR8714802
SRR8714803
SRR8714804
SRR8714805
SRR8714806
SRR8714807
SRR8714808
SRR8714809
SRR8714810
SRR8714811
SRR8714812
SRR8714813
SRR8714814
SRR8714815
SRR8714816
SRR8714817
SRR8714818
SRR8714819
SRR8714820
SRR8714821
SRR8714822
SRR8714823
SRR8714824
SRR8714825
SRR8714826
SRR8714827
SRR8714828
SRR8714829
SRR8714830
SRR8714831
SRR8714832
SRR8714833
SRR8714834
SRR8714835
SRR8714836
SRR8714837
SRR8714838
SRR8714839
SRR8714840
Downloads (all samples in dataset)
TDFs (visualization files) Zip archive 6.1 Gb
Read counts and bidirectional calls Zip archive 383 Mb
Paper Details
SRP accession SRP188216 , SRP188217
GEO accession GSE128183 , GSE128184
Protocol PRO-seq
Organisms M. musculus
Library Prep ligation
Spike-in
Published Yes
Year 2020
First Author Boxer
Last Author Greenberg
DOI 10.1016/j.molcel.2019.10.032
Full citation Lisa D. Boxer, William Renthal, Alexander W. Greben, Tess Whitwam, Andrew Silberfeld, Hume Stroud, Emmy Li, Marty G. Yang, Benyam Kinde, Eric C. Griffith, Boyan Bonev, and Michael E. Greenberg. MeCP2 represses the rate of transcriptional initiation of highly methylated long genes. Molecular Cell, 77(2):294-309.e9, 2020.
Median QC score
Information
2.0
ATAC-seq? No
RNA-seq? Yes
ChIP-seq? Yes
3D Seq? Yes
Other Seq? Yes