DBNascent | Samples

SRR935117,SRR935118,SRR935119,...

**Downloads**
Gene read counts	Bidirectional read counts	Tfit regions	dREG regions
ZIP archive	ZIP archive	ZIP archive	ZIP archive
For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives.

**Technical details**
Sample name	Sample ID	Paper identifier	Protocol	Library prep	Control/Experimental	Wildtype & Untreated	QC score	Replicate
SRR935117	1102	Jonkers2014genome	GRO-seq	ligation	control	True	3	1
SRR935118	1103	Jonkers2014genome	GRO-seq	ligation	control	True	2	2
SRR935119	1104	Jonkers2014genome	GRO-seq	ligation	experimental	False	3	1
SRR935120	1105	Jonkers2014genome	GRO-seq	ligation	experimental	False	2	2
SRR935123	1106	Jonkers2014genome	GRO-seq	ligation	experimental	False	4	1
SRR935124	1107	Jonkers2014genome	GRO-seq	ligation	experimental	False	4	2
SRZ935093	1108	Jonkers2014genome	GRO-seq	ligation	control	True	2	1
SRZ935095	1109	Jonkers2014genome	GRO-seq	ligation	control	True	2	2
SRZ935097	1110	Jonkers2014genome	GRO-seq	ligation	experimental	False	2	1
SRZ935099	1111	Jonkers2014genome	GRO-seq	ligation	experimental	False	1	2
SRZ935101	1112	Jonkers2014genome	GRO-seq	ligation	experimental	False	2	1
SRZ935103	1113	Jonkers2014genome	GRO-seq	ligation	experimental	False	2	2
SRZ935105	1114	Jonkers2014genome	GRO-seq	ligation	experimental	False	2	1
SRZ935107	1115	Jonkers2014genome	GRO-seq	ligation	experimental	False	2	2
SRZ935109	1116	Jonkers2014genome	GRO-seq	ligation	experimental	False	3	1
SRZ935111	1117	Jonkers2014genome	GRO-seq	ligation	experimental	False	3	2
SRZ935113	1118	Jonkers2014genome	GRO-seq	ligation	experimental	False	4	1
SRZ935115	1119	Jonkers2014genome	GRO-seq	ligation	experimental	False	4	2
SRZ935121	1120	Jonkers2014genome	GRO-seq	ligation	experimental	False	3	1

**Cellular details**
Sample name	Organism	Sample type	Cell type	Clone/Individual	Strain	Genotype	Construct
SRR935117	M. musculus	cell line	ESC	V6.5
SRR935118	M. musculus	cell line	ESC	V6.5
SRR935119	M. musculus	cell line	ESC	V6.5
SRR935120	M. musculus	cell line	ESC	V6.5
SRR935123	M. musculus	cell line	ESC	V6.5
SRR935124	M. musculus	cell line	ESC	V6.5
SRZ935093	M. musculus	cell line	ESC	V6.5
SRZ935095	M. musculus	cell line	ESC	V6.5
SRZ935097	M. musculus	cell line	ESC	V6.5
SRZ935099	M. musculus	cell line	ESC	V6.5
SRZ935101	M. musculus	cell line	ESC	V6.5
SRZ935103	M. musculus	cell line	ESC	V6.5
SRZ935105	M. musculus	cell line	ESC	V6.5
SRZ935107	M. musculus	cell line	ESC	V6.5
SRZ935109	M. musculus	cell line	ESC	V6.5
SRZ935111	M. musculus	cell line	ESC	V6.5
SRZ935113	M. musculus	cell line	ESC	V6.5
SRZ935115	M. musculus	cell line	ESC	V6.5
SRZ935121	M. musculus	cell line	ESC	V6.5

**Conditions**
Sample name	Condition type	Treatment	Start time	End time	Duration
SRR935117	vehicle	DMSO (0.0125%)	-50 min	0 min	50 min
SRR935118	vehicle	DMSO (0.0125%)	-50 min	0 min	50 min
SRR935119	treatment	triptolide (500 nM)	-750 s	0 s	750 s
SRR935120	treatment	triptolide (500 nM)	-750 s	0 s	750 s
SRR935123	treatment	triptolide (500 nM)	-50 min	0 min	50 min
SRR935124	treatment	triptolide (500 nM)	-50 min	0 min	50 min
SRZ935093	no treatment		None	None	None
SRZ935095	no treatment		None	None	None
SRZ935097	treatment	flavopiridol (300 nM)	-2 min	0 min	2 min
SRZ935099	treatment	flavopiridol (300 nM)	-2 min	0 min	2 min
SRZ935101	treatment	flavopiridol (300 nM)	-5 min	0 min	5 min
SRZ935103	treatment	flavopiridol (300 nM)	-5 min	0 min	5 min
SRZ935105	treatment	flavopiridol (300 nM)	-750 s	0 s	750 s
SRZ935107	treatment	flavopiridol (300 nM)	-750 s	0 s	750 s
SRZ935109	treatment	flavopiridol (300 nM)	-25 min	0 min	25 min
SRZ935111	treatment	flavopiridol (300 nM)	-25 min	0 min	25 min
SRZ935113	treatment	flavopiridol (300 nM)	-50 min	0 min	50 min
SRZ935115	treatment	flavopiridol (300 nM)	-50 min	0 min	50 min
SRZ935121	treatment	triptolide (500 nM)	-25 min	0 min	25 min

**Sample metrics**
Sample name	Raw read length	Trim read depth	Duplication proportion	Proportion reads mapped	Exon/intron ratio	Unique read proportion	Sample QC score	Sample NRO score
SRR935117	50	22,911,350	0.65454	0.5671	2.08971	0.3553	3	1
SRR935118	50	48,696,176	0.64264	0.5716	2.22247	0.4108	2	1
SRR935119	50	19,798,427	0.57882	0.5721	2.03695	0.43416	3	1
SRR935120	50	28,784,264	0.51486	0.6107	2.02432	0.51422	2	1
SRR935123	50	22,554,508	0.8657	0.5116	1.07556	0.13555	4	1
SRR935124	50	25,200,941	0.81398	0.5161	1.20906	0.18885	4	1
SRZ935093	50	78,097,811	0.63569	0.6581	2.41399	0.45584	2	1
SRZ935095	50	49,317,642	0.54689	0.6825	2.69351	0.51151	2	1
SRZ935097	50	68,558,649	0.60093	0.6487	2.47365	0.4811	2	1
SRZ935099	50	33,672,820	0.49597	0.6881	2.50581	0.53656	1	1
SRZ935101	50	60,515,690	0.55312	0.7088	2.50509	0.54115	2	1
SRZ935103	50	39,740,863	0.56312	0.6698	2.4648	0.47459	2	1
SRZ935105	50	64,109,081	0.61024	0.6663	2.70831	0.4662	2	1
SRZ935107	50	45,924,110	0.52825	0.6902	2.5256	0.52337	2	1
SRZ935109	50	69,344,433	0.73576	0.6255	3.07381	0.32699	3	2
SRZ935111	50	63,235,383	0.71579	0.6535	3.07163	0.33633	3	2
SRZ935113	50	78,231,444	0.81194	0.62	3.4098	0.24128	4	2
SRZ935115	50	71,009,916	0.81254	0.6398	3.35061	0.23739	4	2
SRZ935121	50	55,972,122	0.73125	0.4991	1.71429	0.30148	3	1

**Bidirectionals**
Sample name	Tfit total bidirs	Tfit promoter bidirs	Tfit intronic bidirs	Tfit intergenic bidirs	dREG total bidirs	dREG promoter bidirs	dREG intronic bidirs	dREG intergenic bidirs
SRR935117	15906	5581	5238	3326	11005	5615	2322	2183
SRR935118	25522	8146	8625	6182	19569	7289	5377	5416
SRR935119	9948	3355	3345	1783	6498	3678	1138	1067
SRR935120	14446	4692	4854	2907	10984	5308	2384	2311
SRR935123	2217	674	666	487	715	242	140	306
SRR935124	4200	1210	1518	809	1241	500	253	417
SRZ935093	38861	10311	13208	11328	33305	8437	10481	11633
SRZ935095	38657	12020	12431	10004	29930	8718	8841	9520
SRZ935097	37784	10387	12611	10931	33726	9012	10564	11354
SRZ935099	28088	9166	9085	6896	24615	8621	7014	6860
SRZ935101	30443	8053	10087	9274	35258	9313	11341	12035
SRZ935103	21752	7079	6929	5476	23724	8714	6756	6575
SRZ935105	25413	6995	8410	7554	32752	9137	10403	10952
SRZ935107	22267	6694	7309	5992	27821	8889	8551	8393
SRZ935109	26914	7700	9311	7342	30416	8511	9860	9915
SRZ935111	26277	8114	9150	6485	29319	8718	9601	8989
SRZ935113	29161	8449	10607	7592	30981	8209	10792	9940
SRZ935115	26579	8490	9619	6034	28354	8544	9865	8044
SRZ935121	10793	3370	3820	1836	6223	3004	1358	1281